View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_high_28 (Length: 371)
Name: NF11400_high_28
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 369
Target Start/End: Original strand, 44178068 - 44178423
Alignment:
| Q |
14 |
caaaggctgagcagatggttcagatgtctggccaccaatcagatttgaaggtgcattgtcttcgaaagaaacggatggaacctcggttgaaacattgagt |
113 |
Q |
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| T |
44178068 |
caaaggctgagcagatggttcagatgtctggccaccaatcagatttgaaggtgcattgtcttcgaaagaaacggatggaacctcagttgaaacattgagt |
44178167 |
T |
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| Q |
114 |
tgatccggcttggtcagctttgttttcttagcctgataaatgttagtgacatcctcaagaactgccctcttcttacgcggaaggcatgtatcatcagaga |
213 |
Q |
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| T |
44178168 |
tgatccggcttggtcagctttgttttcttagcctgataaatgttagtgacatcctcaagagctgccctcttcttacgcggaaggcatgtatcatcagaga |
44178267 |
T |
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| Q |
214 |
ctgctctttctgaattggcgccttgcggatgcttttgactttcttgtgctacatccttcaatggtggcaactgtccagttgcacttaaagcagcagctcg |
313 |
Q |
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| T |
44178268 |
ctgctctttctgaattggcgccttgcggatgcttttgactttcttgtgctacatccttcaatggtggcaactgtccagttgcacttaaagcagcagctcg |
44178367 |
T |
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| Q |
314 |
tgcacgagttaatctaaccgggacctctccagctttcgaactgacactcttatctt |
369 |
Q |
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| T |
44178368 |
tgcgcgagttaatctaaccgggacctctccagctttcgaactgacactcttatctt |
44178423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 350
Target Start/End: Original strand, 44171619 - 44171821
Alignment:
| Q |
154 |
tgttagtgacatcctcaagaactgccctcttcttacgcggaaggcatgtatcatcagagactgctctttctgaattggcgccttgcggatgcttttgact |
253 |
Q |
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| T |
44171619 |
tgttagtgacatcttgaagaattgccctctttttatgaggaagatatgtaacatctgaaactgctctttttgaattggctcttaggggctgcttctgatt |
44171718 |
T |
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| Q |
254 |
tt------cttgtgctacatccttcaatggtggcaactgtccagttgcacttaaagcagcagctcgtgcacgagttaatctaaccgggacctctccagct |
347 |
Q |
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| T |
44171719 |
ctgagttcctggtgctacctccttcattggtggtaactgtccagttgtactcaaagccacagctcgagcacgagtcaatcgacttggaacctctccagct |
44171818 |
T |
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| Q |
348 |
ttc |
350 |
Q |
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| T |
44171819 |
ttc |
44171821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 1538699 - 1538777
Alignment:
| Q |
275 |
tggtggcaactgtccagttgcacttaaagcagcagctcgtgcacgagttaatctaaccgggacctctccagctttcgaa |
353 |
Q |
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| T |
1538699 |
tggtggaaactgtccagtttcacttaaagcagcagctcgtgtgtgagttaatcaaaccagaacctctccaactttcgaa |
1538777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 17768746 - 17768824
Alignment:
| Q |
275 |
tggtggcaactgtccagttgcacttaaagcagcagctcgtgcacgagttaatctaaccgggacctctccagctttcgaa |
353 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||| | ||||||||| |||||||| |
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| T |
17768746 |
tggtggaaactgtccagtttcacttaaagcagcagctcgtgtgtgagttaatcaaaccagaacctctccaactttcgaa |
17768824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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