View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_high_31 (Length: 339)

Name: NF11400_high_31
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_high_31
NF11400_high_31
[»] chr4 (2 HSPs)
chr4 (212-332)||(27316307-27316428)
chr4 (165-205)||(6509856-6509896)
[»] chr3 (3 HSPs)
chr3 (129-211)||(28424311-28424393)
chr3 (1-74)||(28424448-28424520)
chr3 (165-212)||(45807043-45807090)
[»] chr8 (3 HSPs)
chr8 (129-210)||(23388234-23388315)
chr8 (1-74)||(23388367-23388440)
chr8 (1-70)||(36941005-36941075)
[»] chr7 (2 HSPs)
chr7 (133-212)||(42840750-42840830)
chr7 (165-205)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (165-204)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (165-212)||(10021004-10021051)
[»] chr1 (4 HSPs)
chr1 (165-211)||(17050398-17050444)
chr1 (165-211)||(51606914-51606960)
chr1 (165-197)||(38688643-38688675)
chr1 (165-197)||(49420098-49420130)
[»] chr2 (1 HSPs)
chr2 (178-214)||(44094086-44094122)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 212 - 332
Target Start/End: Complemental strand, 27316428 - 27316307
Alignment:
Q  212 tatgtttaatcctatttatctttgatgatgtatttacttaccataagtaactaatattcttagataaggattgaatgatggtcctctgcat-aattgttt 310  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  27316428 tatgtttaatcctatttatctttgatcatgtatttacatactataagtaactaatattcttagattaggattgaatgatgatcctctgcataaattgttt 27316329  T
Q  311 gcaacatgtgatcgtgatgtcc 332  Q
    ||||||||||||||||| ||||    
T  27316328 gcaacatgtgatcgtgaagtcc 27316307  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 6509856 - 6509896
Alignment:
Q  165 tttcccatcatgggaaacaactttgctttcccaggctaaac 205  Q
    ||||||||  |||||| ||||||||||||||||||||||||    
T  6509856 tttcccatgctgggaagcaactttgctttcccaggctaaac 6509896  T

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Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 28424393 - 28424311
Alignment:
Q  129 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28424393 caggtcatgactgccagctgcaggtaaaaagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 28424311  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 28424520 - 28424448
Alignment:
Q  1 ttgtttcaacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 74  Q
    |||||||||||| ||||||||||| ||||||| ||||| || | |||||||||||||| |||||||||||||||    
T  28424520 ttgtttcaacagcgtgcaattggagtaggattatgaca-caaatgagtcatttgttctctgagaatgcaaagtc 28424448  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 45807043 - 45807090
Alignment:
Q  165 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 212  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||||||    
T  45807043 tttcccatcataggaaacaactttgctttcccattctaaaccccacct 45807090  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 23388315 - 23388234
Alignment:
Q  129 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccac 210  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23388315 caggtcaggactgccagctgcaggtaaaaagcaaattttcccatcatgggaaacaactttgctttcccaggctaaacgccac 23388234  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23388440 - 23388367
Alignment:
Q  1 ttgtttcaacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  23388440 ttgtttcaacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctcttagaatgcaaagtc 23388367  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36941005 - 36941075
Alignment:
Q  1 ttgtttcaacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctttg-agaatgcaa 70  Q
    ||||||||| |||||||||||||||| | ||| || ||||||| |||| ||||||||| || |||||||||    
T  36941005 ttgtttcaatagtgtgcaattggattggaattatggcaacagaggagtaatttgttctctgaagaatgcaa 36941075  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 42840830 - 42840750
Alignment:
Q  133 tcatgactgccagctgcaggtaaagagcaaagtttcccatcatg-ggaaacaactttgctttcccaggctaaacgccacct 212  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||   |||||||||| ||||||| | || ||||||||||    
T  42840830 tcatgactgccaactggaggtaaaaagcaaagtttcccatcatgaaaaaacaactttactttccccgacttaacgccacct 42840750  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 40740706 - 40740666
Alignment:
Q  165 tttcccatcatgggaaacaactttgctttcccaggctaaac 205  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  40740706 tttcccatcatgggaaacaattttcctttcccatgctaaac 40740666  T

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Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 6112 - 6151
Alignment:
Q  165 tttcccatcatgggaaacaactttgctttcccaggctaaa 204  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  6112 tttcccatcatgggaaacaactttggtttcccaggctaaa 6151  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 10021051 - 10021004
Alignment:
Q  165 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 212  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||    
T  10021051 tttcccatcatgggaaactagtttgttttcccaggctaaacggcacct 10021004  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 17050398 - 17050444
Alignment:
Q  165 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 211  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  17050398 tttcccatcatgggaaacaactttcatttcccaagctaaactccacc 17050444  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 51606960 - 51606914
Alignment:
Q  165 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 211  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||    
T  51606960 tttcccatcatgggaaacaactttccttgcccatgctaaactccacc 51606914  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 38688643 - 38688675
Alignment:
Q  165 tttcccatcatgggaaacaactttgctttccca 197  Q
    |||||||||||||||||||||||| ||||||||    
T  38688643 tttcccatcatgggaaacaacttttctttccca 38688675  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 49420130 - 49420098
Alignment:
Q  165 tttcccatcatgggaaacaactttgctttccca 197  Q
    |||||||||||||||||||||||| ||||||||    
T  49420130 tttcccatcatgggaaacaactttcctttccca 49420098  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 44094122 - 44094086
Alignment:
Q  178 gaaacaactttgctttcccaggctaaacgccacctat 214  Q
    |||||||||||| |||||||||||||| |||||||||    
T  44094122 gaaacaactttgatttcccaggctaaatgccacctat 44094086  T

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