View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_high_41 (Length: 291)
Name: NF11400_high_41
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 50971955 - 50972236
Alignment:
| Q |
1 |
aaaagtgtcaaaaatagagtccataacacatatgaaaaaccaaagatatagggtctgttaaggcatcagtgttaataatattgttaaagcatgaagcagg |
100 |
Q |
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||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50971955 |
aaaagtgtcaaaaatagaggccagaacacat--gaaaaaccaaagatatagggtctgttaaggcatcagtgttaataatattgttaaagcatgaagcagg |
50972052 |
T |
|
| Q |
101 |
caataagtatgatgatagatgttaaagcatgaggcaaattttctacctagaaagagtagaatctgaacaagcaccagtcataggagatcaagtaaacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50972053 |
caataagtatgatgatagatgttaaagcatgaggcaaattttctacctagaaagagtagaatctgaacaagcaccagtcataggagatcaagtaaacaaa |
50972152 |
T |
|
| Q |
201 |
ttcctcacatgcatctcatcaaacagattacgtgcattctccaaacactacagcaattgcaaggtt-atgaatcaattcttctc |
283 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50972153 |
ttcctcacatgcatttcatcaaacagattacgtgcattctccaaacactacagcaattgcaaggttgatgaatcaattcttctc |
50972236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 8423761 - 8423708
Alignment:
| Q |
195 |
aacaaattcctcacatgcatctcatcaaacagattacgtgcattctccaaacac |
248 |
Q |
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|||||||||||||||||||| |||||||||| |||| ||||||||| |||||| |
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| T |
8423761 |
aacaaattcctcacatgcatttcatcaaacactttacatgcattctcgaaacac |
8423708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 36085803 - 36085884
Alignment:
| Q |
164 |
tgaacaagcaccagtcataggagatcaagtaaacaaattcctcacatgcatctcatcaaacagattacgtgcattctccaaa |
245 |
Q |
| |
|
|||||||| |||| |||||| ||| ||||||||||||||| ||||| ||| |||||||||| ||| |||| ||||||||| |
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| T |
36085803 |
tgaacaagaaccaatcatagcagaccaagtaaacaaattcatcacaatcatttcatcaaacactttatgtgccttctccaaa |
36085884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 4133408 - 4133355
Alignment:
| Q |
195 |
aacaaattcctcacatgcatctcatcaaacagattacgtgcattctccaaacac |
248 |
Q |
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|
||||||||||| |||||||| |||||||||| |||| ||||||||| |||||| |
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|
| T |
4133408 |
aacaaattcctgacatgcatttcatcaaacacgttacatgcattctcgaaacac |
4133355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 30193846 - 30193802
Alignment:
| Q |
165 |
gaacaagcaccagtcataggagatcaagtaaacaaattcctcaca |
209 |
Q |
| |
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|||||| ||||| |||||| ||| ||||||||||||||||||||| |
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| T |
30193846 |
gaacaaccaccaatcatagcagaccaagtaaacaaattcctcaca |
30193802 |
T |
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