View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_high_43 (Length: 264)
Name: NF11400_high_43
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_high_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 38729626 - 38729884
Alignment:
| Q |
2 |
agtagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagacg |
101 |
Q |
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| T |
38729626 |
agtagagataaaagaacagtataagtgctcaggcctggccttaaacctgcattagtcattgaattgtacagtttcatagcatgatcgatttgtccagacg |
38729725 |
T |
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| Q |
102 |
cagcatgcatttccaagagacaagcatacgtagatggagttggtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagct |
201 |
Q |
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| T |
38729726 |
cagcatgcatttccaagagacaagcatatgtagatggagttggtagaaatccagctttctcc----atatctgaaaatgcagacatagcaatatcaagct |
38729821 |
T |
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| Q |
202 |
tccctgattttgcatgtgactcaatgatcaatgtaaacaagccaaagtttggtctgaaccctg |
264 |
Q |
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| T |
38729822 |
tccctgattttgcatgtgactcaatgatcaatgtatacaagccaaagtttggtctgaaccctg |
38729884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 385917 - 385674
Alignment:
| Q |
1 |
cagtagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttgatggcatgatcaatttgtccagac |
100 |
Q |
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| T |
385917 |
cagtagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcattgaattgtacagtttcatggcatgatcaatttgtccggat |
385818 |
T |
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| Q |
101 |
gcagcatgcatttccaagagacaagcatacgtagatggagttggtagaaatccagctttctccatatatatctgaaaatgcagacatatcaatatcaagc |
200 |
Q |
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| T |
385817 |
gaagcatgcatttccaatagacaagcgtatgtagatagagttagtagaaatccagctttctcc----atgtctgaaaatgcagacatagcaatatcaagc |
385722 |
T |
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| Q |
201 |
ttccctgattttgcatgtgactcaatgatcaatgtaaacaagccaaag |
248 |
Q |
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| T |
385721 |
ttccctgattttgcatgagactcgatgatcaatgtatacaagccaaag |
385674 |
T |
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