View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_high_50 (Length: 243)
Name: NF11400_high_50
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 32203424 - 32203208
Alignment:
| Q |
1 |
tctaccacatttgcagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203424 |
tctaccacatttgcagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaa |
32203325 |
T |
|
| Q |
101 |
atcaagcacataaatgataaatcagtttcctacaaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32203324 |
atcaagcacataaatgataaatcagtttcctacaaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttg |
32203225 |
T |
|
| Q |
201 |
atacacagaggttaatt |
217 |
Q |
| |
|
||||||||||||||||| |
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| T |
32203224 |
atacacagaggttaatt |
32203208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 35566568 - 35566784
Alignment:
| Q |
1 |
tctaccacatttgcagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35566568 |
tctaccacatttgcagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctgataagtgggtttaaa |
35566667 |
T |
|
| Q |
101 |
atcaagcacataaatgataaatcagtttcctacaaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35566668 |
atcaagcacataaatgataaatcagtttcctacgaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaaggaattcaggtacttg |
35566767 |
T |
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| Q |
201 |
atacacagaggttaatt |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
35566768 |
atacacagaggttaatt |
35566784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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