View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_high_53 (Length: 238)
Name: NF11400_high_53
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5418763 - 5418984
Alignment:
| Q |
1 |
tttctcaatattctacactttgacagcaagatgaagccagcatttgcagctatgttacttgtgtgtcttatccttagctcatttatgttcgaaatgtcca |
100 |
Q |
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| T |
5418763 |
tttctcaatattctacactttgacagcaagatgaagccagcatttgcagctatgttacttgtgtgtcttatccttagctcatttatgttcgaaatgtcca |
5418862 |
T |
|
| Q |
101 |
ttgctggcactggtatgttataagctcaattgggagttatattactctattaatagttattactttattatactctactcattttaaattttggatggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
5418863 |
ttgctggcactggtatgttataagctcaattgggag-tatattactctattaatagttattcctttattatactctactcattttaaatttttgatggtt |
5418961 |
T |
|
| Q |
201 |
ggtttgagggtgagatgtttttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
5418962 |
ggtttgagggtgagatgtttttt |
5418984 |
T |
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