View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_high_55 (Length: 228)

Name: NF11400_high_55
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_high_55
NF11400_high_55
[»] chr4 (1 HSPs)
chr4 (1-222)||(49944950-49945171)
[»] chr8 (1 HSPs)
chr8 (1-222)||(25040839-25041060)
[»] chr5 (3 HSPs)
chr5 (1-222)||(14485067-14485288)
chr5 (1-185)||(17008370-17008553)
chr5 (4-127)||(20748049-20748172)
[»] chr6 (1 HSPs)
chr6 (1-222)||(16726972-16727184)
[»] chr7 (1 HSPs)
chr7 (48-172)||(27286433-27286560)
[»] scaffold0011 (2 HSPs)
scaffold0011 (4-127)||(136922-137045)
scaffold0011 (4-127)||(142146-142269)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49944950 - 49945171
Alignment:
Q  1 catgggcatatgatgttattgttgtcgtttgcatgagcaacagcaaactcaacaaactctttcactccttctatgtactcctttgacgctcgattcgcag 100  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49944950 catgggcatatgatgttactgttgtcgtttgcatgagcaacaacaaactcaacaaactctttcactccttctatgtactcctttgaagctcgattcgcag 49945049  T
Q  101 acacccatttccgatccatagttcctagatcttcatagttagatgtcaggaatagttagtttgagtttattggtaacaaatattactagttaaaatttgg 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49945050 acacccatttccgatccatagttcctagatcttgatagttagatgtcgggaatagttagtttgagtttattggtaacaaatattactagttaaaatttgg 49945149  T
Q  201 ttctaacaaccgagttatgaat 222  Q
    ||||||||||||||||||||||    
T  49945150 ttctaacaaccgagttatgaat 49945171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25040839 - 25041060
Alignment:
Q  1 catgggcatatgatgttattgttgtcgtttgcatgagcaacagcaaactcaacaaactctttcactccttctatgtactcctttgacgctcgattcgcag 100  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25040839 catgagcatatgatgttacttttgtcgtttgcatgagcaacagcaaactcaacaaactctttaactccttctatgtactcctttgacgctcgattcgcag 25040938  T
Q  101 acacccatttccgatccatagttcctagatcttcatagttagatgtcaggaatagttagtttgagtttattggtaacaaatattactagttaaaatttgg 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25040939 acacccatttccgatccatagttcctagatcttgatagttagatgtcgggaatagttagtttgagtttattggtaacaaatattactagttaaaatttgg 25041038  T
Q  201 ttctaacaaccgagttatgaat 222  Q
    ||||||||||||||||||||||    
T  25041039 ttctaacaaccgagttatgaat 25041060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14485288 - 14485067
Alignment:
Q  1 catgggcatatgatgttattgttgtcgtttgcatgagcaacagcaaactcaacaaactctttcactccttctatgtactcctttgacgctcgattcgcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14485288 catgggcatatgatgttattgttgtcgtttgcatgagcaacggcaaactcaacaaactctttcactccttctatgtactcctttgacgctcgattcgtag 14485189  T
Q  101 acacccatttccgatccatagttcctagatcttcatagttagatgtcaggaatagttagtttgagtttattggtaacaaatattactagttaaaatttgg 200  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14485188 acactcatttccgatccatagttcctagatcttgatagttagatgtcgggaatagttagtttgagtttattggtaacaaatattactagttaaaatttgg 14485089  T
Q  201 ttctaacaaccgagttatgaat 222  Q
    |||||||||||||| |||||||    
T  14485088 ttctaacaaccgagctatgaat 14485067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 17008370 - 17008553
Alignment:
Q  1 catgggcatatgatgttattgttgtcgtttgcatgagcaacagcaaactcaacaaactctttcactccttctatgtactcctttgacgctcgattcgcag 100  Q
    |||||||||||||||||| || ||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17008370 catgggcatatgatgttactgctgtctgttgtatgagcaacagcaaactcaacaaactctttcactccttctatgtactcctttg-cgctcgattcgcag 17008468  T
Q  101 acacccatttccgatccatagttcctagatcttcatagttagatgtcaggaatagttagtttgagtttattggtaacaaatatta 185  Q
    |||||||||||||||||||||||| ||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  17008469 acacccatttccgatccatagttcataggtcttgatagttagttgtcgggaatagttagtttgagtttattggtaacaaatatta 17008553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 20748172 - 20748049
Alignment:
Q  4 gggcatatgatgttattgttgtcgtttgcatgagcaacagcaaactcaacaaactctttcactccttctatgtactcctttgacgctcgattcgcagaca 103  Q
    ||||||||||| ||| |  |||| | ||||| ||||| |||||||  ||||||||||| ||| || |||  ||| || |||||||||||||| || ||||    
T  20748172 gggcatatgattttactagtgtcttctgcattagcaatagcaaacctaacaaactcttgcaccccatcttcgtattcttttgacgctcgattggccgaca 20748073  T
Q  104 cccatttccgatccatagttccta 127  Q
     |||||||||||||||||||||||    
T  20748072 tccatttccgatccatagttccta 20748049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16726972 - 16727184
Alignment:
Q  1 catgggcatatgatgttattgttgtcgtttgcatgagcaacagcaaactcaacaaactctttcactccttctatgtactcctttgacgctcgattcgcag 100  Q
    |||||||||||||||||| |||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16726972 catgggcatatgatgttactgttgtcgtttgcatgagcaaca---------acaaactctttcactccttctatgtactcctttgacgctcgattcgcag 16727062  T
Q  101 acacccatttccgatccatagttcctagatcttcatagttagatgtcaggaatagttagtttgagtttattggtaacaaatattactagttaaaatttgg 200  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16727063 acacccatttccgatccatagttcctagatcttgatagttagctgtcgggaatagttagtttgagtttattggtaacaaatattactagttaaaatttgg 16727162  T
Q  201 ttctaacaaccgagttatgaat 222  Q
    ||||||||||||||||||||||    
T  16727163 ttctaacaaccgagttatgaat 16727184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 27286433 - 27286560
Alignment:
Q  48 ctcaacaaactctttcactccttctatgtactcctttgacgctcgattcgcagacacccatttccgatccatagttcctagatcttcatagttagatgtc 147  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  27286433 ctcaacaaactcttccactccttctatgtactcctttgacgctcgattcgcaaacactcatttccgatccatagttcctaggtcttgatagttagctgtc 27286532  T
Q  148 aggaa---tagttagtttgagtttattg 172  Q
     ||||   ||||||||||||||||||||    
T  27286533 gggaatagtagttagtttgagtttattg 27286560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 137045 - 136922
Alignment:
Q  4 gggcatatgatgttattgttgtcgtttgcatgagcaacagcaaactcaacaaactctttcactccttctatgtactcctttgacgctcgattcgcagaca 103  Q
    ||||||||||| ||| |  |||| | ||||| ||||| |||||||  || |||||||| ||| || |||  ||| || |||||||||||||| ||  |||    
T  137045 gggcatatgattttactagtgtcttctgcattagcaatagcaaacctaaaaaactcttgcaccccatcttcgtattcttttgacgctcgattggccaaca 136946  T
Q  104 cccatttccgatccatagttccta 127  Q
     ||||||| |||||||||||||||    
T  136945 tccatttctgatccatagttccta 136922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 142269 - 142146
Alignment:
Q  4 gggcatatgatgttattgttgtcgtttgcatgagcaacagcaaactcaacaaactctttcactccttctatgtactcctttgacgctcgattcgcagaca 103  Q
    ||||||||||| ||| |  |||| | ||||| ||||| |||||||  || |||||||| ||| || |||  ||| || |||||||||||||| ||  |||    
T  142269 gggcatatgattttactagtgtcttctgcattagcaatagcaaacctaaaaaactcttgcaccccatcttcgtattcttttgacgctcgattggccaaca 142170  T
Q  104 cccatttccgatccatagttccta 127  Q
     ||||||| |||||||||||||||    
T  142169 tccatttctgatccatagttccta 142146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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