View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_high_6 (Length: 674)

Name: NF11400_high_6
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_high_6
NF11400_high_6
[»] chr1 (1 HSPs)
chr1 (19-665)||(23769151-23769796)


Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Original strand, 23769151 - 23769796
Alignment:
Q  19 accccgaactaagtatccgaatttcatagaattatgtgaaacaaactgatatagtgttcacttaccacatcaaggactccattaggatcaaccaagaaac 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23769151 acccggaactaagtatccgaatttcatagaattatgtgaaacaaactgatatagtgt-cacttaccacatcaaggactccattaggatcaaccaagaaac 23769249  T
Q  119 ctgttagttgtcctttaccatagcaaagaactattggatccatcatcctagtagttgcaagaagnnnnnnnnttattagttctatcacacaaattaggnn 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||      
T  23769250 ctgttagttgtcctttaccatagcaaagaactattggatccatcatcctagtagttgcaagaagaaaaaaaattattagttctatcacacaaattaggtt 23769349  T
Q  219 nnnnnccttataagaaaaaggttgtgactcacctatttccttccatccacccaggaaatggttcatttaaagtgctctcaataacacttggcctaattac 318  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769350 tttttccttataagaaaaaggttgtgactcacctatttccttccatccacccaggaaatggttcatttaaagtgctctcaataacacttggcctaattac 23769449  T
Q  319 aacaactggaatatcttccctcaatttgtcaatcatcatttctcccattgcctttgtgaacacataagtatcttgccatccatatcttctagccctatat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769450 aacaactggaatatcttccctcaatttgtcaatcatcatttctcccattgcctttgtgaacacataagtatcttgccatccatatcttctagccctatat 23769549  T
Q  419 agaaaaatcaaatcaaattaagcttgtgagttttaagaatattcacttaattgatggataaatagatacgttagtttcgagaaaacaaatatagatacat 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23769550 agaaaaatcaaatcaaattaagcttgtgagttttaagaatattcacttaattgatggataaatagatacgttagtttcgagaaaacaaatatagatgcat 23769649  T
Q  519 tatttaagnnnnnnnnaaccatctgatttttcagggaaaaggagttctcgtaattcataattcgatcagaaggtaagtaaagccttattgatgaatgtaa 618  Q
    ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  23769650 tatttaagttttttttaaccatctgatttttcagggaaaaggagttctcgtaattcataattcgatcagaaggtaagtaaagtcttattgatgaatgtga 23769749  T
Q  619 aacataggatcactaaaaatacctctctagacccatctccttcatct 665  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  23769750 aacatagggtcactaaaaatacctctctagacccatctccttcatct 23769796  T

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