View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_high_8 (Length: 588)
Name: NF11400_high_8
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 931926 - 932250
Alignment:
| Q |
12 |
aagaacaacagatcattggaagaggttcataagcccgattacgtggcgctgtaagtggattgagttgaaactgaggtcacttcactctcaagaacgtaaa |
111 |
Q |
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| T |
931926 |
aagaacaacagatcattggaagaggttcataagcccgattacgtggcgctgtaagtggattgagttgaaactgaggtcacttcactctcaagaacgtaaa |
932025 |
T |
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| Q |
112 |
tatgaaaaagagcttgcggcactcaattatacaaagcagcttgatttttcacacttaacattagatggttccggcatcaaatcggtacctatttctggtc |
211 |
Q |
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| T |
932026 |
tatgaaaaagagcttgcggcactcaattatacaaagcagcttgatttttcacacttaacattagatggttccggcatcaaatcggtacctatttctggtc |
932125 |
T |
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| Q |
212 |
ggatgcataggaataaaattatgaagaggnnnnnnngagtaagagttgaagagaaatgtgatttagcatcacacatgtctaaccatactttattctccta |
311 |
Q |
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| T |
932126 |
ggatgcataggaataaaattatgaagaggaaaaaaagagtaagagttgaagagaaatgtgatttagcatcacacatgtctaaccatactttattctccta |
932225 |
T |
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| Q |
312 |
ctatggtatgccatttccttatata |
336 |
Q |
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| T |
932226 |
ctatggtatgccatttccttatata |
932250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 402 - 572
Target Start/End: Original strand, 932316 - 932486
Alignment:
| Q |
402 |
cagagaaagcaaattgtaatgttgaggttggtttgggagatagtcacaaagttgcaataggttagtagcagatatgtatatgatgttgtttttgttattt |
501 |
Q |
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| T |
932316 |
cagagaaagcaaattgtaatgttgaggttggtttgggagatagtcacaaagttgcaataggttagtagcagatatgtatatgatgttgtttttgttattt |
932415 |
T |
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| Q |
502 |
atgtgacttacaaaaaatctctacccatcattgttaatgaaatgagtacaaagaatttgatacacagattt |
572 |
Q |
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| T |
932416 |
atgcgacttacaaaaaatctctacccatcattgttaatgaaatgagtacaaagaatttgatacacagattt |
932486 |
T |
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