View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_11 (Length: 526)
Name: NF11400_low_11
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 39360398 - 39360661
Alignment:
| Q |
17 |
gaaacaaacaacagtcatcatattacttcaacatagcaaagacgtaggttcacacatggacttctaggttctatggactaaaaatttcagtactaactaa |
116 |
Q |
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| T |
39360398 |
gaaacaaacaacattcgtcatattatttcaacatagcaaagacgtaggttcacacatggacttctaggttctatgaactaaaaatttcagtactaactaa |
39360497 |
T |
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| Q |
117 |
tacccgaactacatatcttagttgatcgtcgcagtgtttgcaggtagattatttgatagaatgatttt-aacatgcatacaaattattatcatatttgta |
215 |
Q |
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| T |
39360498 |
tacccaaactacatatcttagttgatcgttgcagtgtttgcaggtagattatttgatagaatgattttaaacatgcatacaaattattatgatatttgta |
39360597 |
T |
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| Q |
216 |
atatttataccaatatataaagaagatacactttcgttcaaactaatttttatcattttaaact |
279 |
Q |
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| T |
39360598 |
atatttataccaatatataaagaagttacactttcgttcaaactaatttttatcattttaaact |
39360661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 390 - 519
Target Start/End: Original strand, 39360772 - 39360901
Alignment:
| Q |
390 |
caatgtttattcaacactataaatgccttattttgatcttatctnnnnnnntattatgtgttaacataatatatttttctcacaatattatcatttgtac |
489 |
Q |
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| T |
39360772 |
caatgtttattcaacactataaatgccttattttgatcttatctaaaaaaatattatgtgttaacataacatatttttctcacaatattatcatttgtac |
39360871 |
T |
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| Q |
490 |
ttctattaccatccatatgacttcatctca |
519 |
Q |
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| T |
39360872 |
ttctattaccatccatatgacttcatctca |
39360901 |
T |
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