View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11400_low_12 (Length: 513)
Name: NF11400_low_12
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_12 |
 | |
|
| [»] scaffold0011 (4 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 5 - 509
Target Start/End: Complemental strand, 16726989 - 16726487
Alignment:
| Q |
5 |
taacatcatatgcccgtgcttacattgttgttacagaacagttagtgcggagcatttgcaagatcacttaatatgtaatggaatcgatgaaagctataca |
104 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16726989 |
taacatcatatgcccatgcttagaatgttgttacagaacagttaatgcggagcatttgcaagatcacttaatatgtaatggaa--gatgaaagctataca |
16726892 |
T |
|
| Q |
105 |
tgttggacaatgcacggggaagaagaaactgagtctgctggtttgaggagtaatgtgagagatacgtcaaatgattatgagtttgatcgagtcgaagagt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16726891 |
tgttggacaatgcacggggaagaagaaactgagtctgctagtttgaggagtaatgtgagagatacgtcaaatgattatgagtttgatcgagtcgaagagt |
16726792 |
T |
|
| Q |
205 |
ttatgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagatgccattgtatgatggatgtgctaaatt |
304 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16726791 |
ttatgaatgaaataaaagaagatcttcgtgattgtcccgaaatgtttgagaggctagaaagtgattcaaagataccattgtatgatggatgtgctaaatt |
16726692 |
T |
|
| Q |
305 |
cacaagattgtctacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttacagacttgctaactctgttaaaagatatg |
404 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16726691 |
cacaagattgtctacggtcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttacagacttgctaactatgttaaaagatatg |
16726592 |
T |
|
| Q |
405 |
ttgcctgagaataacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagttatgagaagatacatgcttgtcctaaag |
504 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16726591 |
ttgtctgagaataacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagttatgagaagatacatgcttgtcctaaag |
16726492 |
T |
|
| Q |
505 |
attgc |
509 |
Q |
| |
|
||||| |
|
|
| T |
16726491 |
attgc |
16726487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 217 - 509
Target Start/End: Original strand, 12759819 - 12760111
Alignment:
| Q |
217 |
ttgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagatgccattgtatgatggatgtgctaaattcacaagattgtc |
316 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| | | || ||||||||| ||| ||||| |||||||| || |||||||||||| |||| |
|
|
| T |
12759819 |
ttgaagaagatcttcgggattgtcctgaaatgtttgagagattggttagtgattcagagaaaccattatatgatggttgcagcaaattcacaagaatgtc |
12759918 |
T |
|
| Q |
317 |
tacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttacagacttgctaactctgttaaaagatatgttgcctgagaat |
416 |
Q |
| |
|
| | | || || ||||| || ||||||| | ||||||||||||||||| ||||| ||||||||| |||| || | | ||||||| |||| || || |
|
|
| T |
12759919 |
tgcagtattgaagttgtacaatataaaagcgagaaatggatggtctgataaaagcttcacagacttgttaacccttctgatagatatgctgccaaaggat |
12760018 |
T |
|
| Q |
417 |
aacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagttatgagaagatacatgcttgtcctaaagattgc |
509 |
Q |
| |
|
|| || || |||||| ||| |||||| || ||| | ||||| | || ||||||||||||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
12760019 |
aatgttcttcctagtagaaactatgaagccaaaaaaatgttgtgctcgattggcatgagttatgaaaaaatacacgcttgtcctaacgattgc |
12760111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 217 - 509
Target Start/End: Complemental strand, 14653383 - 14653091
Alignment:
| Q |
217 |
ttgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagatgccattgtatgatggatgtgctaaattcacaagattgtc |
316 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| | | || ||||||||| ||| ||||| || ||||| ||| |||||||||||| |||| |
|
|
| T |
14653383 |
ttgaagaagatcttcgggattgtcctgaaatgtttgagagattggttagtgattcagagaaaccattatacgatggttgtagcaaattcacaagaatgtc |
14653284 |
T |
|
| Q |
317 |
tacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttacagacttgctaactctgttaaaagatatgttgcctgagaat |
416 |
Q |
| |
|
| | | || || ||||| || ||||||| | ||||||||||||||||| ||||| ||||||||| |||| || | | ||||||| |||| || || |
|
|
| T |
14653283 |
tgcagtattgaagttgtacaatataaaagcgagaaatggatggtctgataaaagcttcacagacttgttaacccttctgatagatatgctgccaaaggat |
14653184 |
T |
|
| Q |
417 |
aacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagttatgagaagatacatgcttgtcctaaagattgc |
509 |
Q |
| |
|
|| || || |||||| ||| ||||| || ||| | ||||| | || ||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
14653183 |
aatgttcttcctagtagaaattatgaagccaaaaaaatgttgtgctcgattggcatgagttatgaaaagatacacgcttgtcctaacgattgc |
14653091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 5 - 480
Target Start/End: Complemental strand, 25040856 - 25040381
Alignment:
| Q |
5 |
taacatcatatgcccgtgcttacattgttgttacagaacagttagtgcggagcatttgcaagatcacttaatatgtaatggaatcgatgaaagctataca |
104 |
Q |
| |
|
||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25040856 |
taacatcatatgctcatgcttaaaatgttgttacagaacagttagtgcggagcatttgcaagatcacttaatatgtaatggaatcgatgaaagctataca |
25040757 |
T |
|
| Q |
105 |
tgttggacaatgcacggggaagaagaaactgagtctgctggtttgaggagtaatgtgagagatacgtcaaatgattatgagtttgatcgagtcgaagagt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25040756 |
tgttggacaatgcacggggaagaagaaactgagtctgctggtttgaggagtaatgtgagagatacgtcaaatgattatgagtttgatcgagtcgaagagt |
25040657 |
T |
|
| Q |
205 |
ttatgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagatgccattgtatgatggatgtgctaaatt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25040656 |
ttatgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttgagaggctagtaagagattcaaagataccattgtatgatggatgtgctaaatt |
25040557 |
T |
|
| Q |
305 |
cacaagattgtctacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttacagacttgctaactctgttaaaagatatg |
404 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25040556 |
cacaaggttgtctacggtcttaaaattgtataatttaaaagcacgcaatggatggtctgataagagctttacagacttgctaactctattaaaagatatg |
25040457 |
T |
|
| Q |
405 |
ttgcctgagaataacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagttatg |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25040456 |
ttgcctgagaataacgtgctccctagtcgaacctatgaggctaaacaaatgttacgttctattggcatgagttatg |
25040381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 509
Target Start/End: Complemental strand, 34211799 - 34211507
Alignment:
| Q |
217 |
ttgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagatgccattgtatgatggatgtgctaaattcacaagattgtc |
316 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| | | || ||||||||| ||| ||||| || ||||| || |||||||||||| |||| |
|
|
| T |
34211799 |
ttgaagaagatcttcgggattgtcctgaaatgtttgagagattggttagtgattcagagaaaccattatacgatggttgcagcaaattcacaagaatgtc |
34211700 |
T |
|
| Q |
317 |
tacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttacagacttgctaactctgttaaaagatatgttgcctgagaat |
416 |
Q |
| |
|
| | || || ||||| || ||||||| | ||||||||||||||||| ||||| ||||||||| |||| || | | ||||||| ||| || || |
|
|
| T |
34211699 |
tgtagtattgaagttgtacaatataaaagcgagaaatggatggtctgataaaagcttcacagacttgttaacccttctgatagatatgctgctaaaggat |
34211600 |
T |
|
| Q |
417 |
aacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagttatgagaagatacatgcttgtcctaaagattgc |
509 |
Q |
| |
|
|| || || |||||| ||| |||||| || ||| | ||||| | || ||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
34211599 |
aatgttcttcctagtagaaactatgaagccaaaaaaatgttgtgctcgattggcatgagttatgaaaagatacacgcttgtcctaacgattgc |
34211507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 509
Target Start/End: Original strand, 6772581 - 6772873
Alignment:
| Q |
217 |
ttgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagatgccattgtatgatggatgtgctaaattcacaagattgtc |
316 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| | | || ||||||||| ||| || || |||||||| || |||||||||||| |||| |
|
|
| T |
6772581 |
ttgaagaagatcttcgggattgtcctaaaatgtttgagagattggttagtgattcagagaaaccgttatatgatggttgcatcaaattcacaagaatgtc |
6772680 |
T |
|
| Q |
317 |
tacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttacagacttgctaactctgttaaaagatatgttgcctgagaat |
416 |
Q |
| |
|
| | | || || ||||| || |||||||| | ||||||||||||||||| ||||| ||||||||| |||| || | ||||||||| |||| || || |
|
|
| T |
6772681 |
tgcagtattgaagttgtacaatttaaaagcgagaaatggatggtctgataaaagcttcacagacttgttaacccttatgaaagatatgctgccacaggat |
6772780 |
T |
|
| Q |
417 |
aacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagttatgagaagatacatgcttgtcctaaagattgc |
509 |
Q |
| |
|
|| || || || | ||| |||||| || ||| | ||||| | || ||||||||||||||||| | ||| || ||||||||||| |||||| |
|
|
| T |
6772781 |
aatgttcttcccgatagaaactatgaagccaaaaaaatgttgtgctcgattggcatgagttatgaaaggattcacgcttgtcctaacgattgc |
6772873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 403
Target Start/End: Complemental strand, 49944967 - 49944568
Alignment:
| Q |
5 |
taacatcatatgcccgtgcttacattgttgttacagaacagttagtgcggagcatttgcaagatcacttaatatgtaatggaatcgatgaaagctataca |
104 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49944967 |
taacatcatatgcccatgcttagaatgttgttacagaatagttagtgcggagcattttcaagatcacttaatatgtaatggaatcgatgaaagctataca |
49944868 |
T |
|
| Q |
105 |
tgttggacaatgcacggggaagaagaaactgagtctgctggtttgaggagtaatgtgagagatacgtcaaatgattatgagtttgatcgagtcgaagagt |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49944867 |
tgttggacaatgcacagggaagaagaaactgagtctgttggtttgaggagtaatgtgagagatacgtcaaatgattatgagtttgatcgagtcgaagagt |
49944768 |
T |
|
| Q |
205 |
ttatgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagatgccattgtatgatggatgtgctaaatt |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49944767 |
ttttgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttgagaggctagtaagtgattcaaagataccattgtatgatggatgtgctaaatt |
49944668 |
T |
|
| Q |
305 |
cacaagattgtctacgatcttaaaattgtataacttaaaagcacgcaatggatggtc-tgataagagctttacagacttgctaactctgttaaaagatat |
403 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49944667 |
cacaagattgtctacggtcttaaaattgtataacttaaaagcacgcaatggatggtcttgataagagctttacagacttgctaactctattaaaagatat |
49944568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 90 - 273
Target Start/End: Complemental strand, 17524979 - 17524796
Alignment:
| Q |
90 |
gatgaaagctatacatgttggacaatgcacggggaagaagaaactgagtctgctggtttgaggagtaatgtgagagatacgtcaaatgattatgagtttg |
189 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17524979 |
gatgaaatctatacatgttggacaacgcacggggaagaagaaattgagtccgctgatttgaggagcaatgtgagagatacgtcaaatgattatgagtttg |
17524880 |
T |
|
| Q |
190 |
atcgagtcgaagagtttatgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaa |
273 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||||| | |||| ||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
17524879 |
atcgtgtcgaagagtttttgaatgtaattgaagaagatatatgtgactgtgccaaaatgtttgagaggctagtaagtgattcaa |
17524796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 178 - 509
Target Start/End: Original strand, 20748346 - 20748677
Alignment:
| Q |
178 |
attatgagtttgatcgagtcgaagagtttatgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagat |
277 |
Q |
| |
|
||||||||||||||| ||| ||||| || |||||| ||||||||| ||||| ||||||||||| ||||||||||| || |||||| |||| || ||| |
|
|
| T |
20748346 |
attatgagtttgatcaagttgaagaaattctgaatgtaattgaagatgatctccgtgattgtcctaaaatgtttgagagggtagtaattgatgcagagac |
20748445 |
T |
|
| Q |
278 |
gccattgtatgatggatgtgctaaattcacaagattgtctacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttaca |
377 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| ||| |
|
|
| T |
20748446 |
accattgtatgaaggatgtactaaattcacaagattgtctacgatcttaaaattgtataagttaaaagcaggcaatggatggtctgataggagcttcaca |
20748545 |
T |
|
| Q |
378 |
gacttgctaactctgttaaaagatatgttgcctgagaataacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagtt |
477 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
20748546 |
gacttgctaactttgttaaaagatattttgcctaagaataacgtgctccctagtcgaacctatgaggctaaacgattgttatgttctattggcatgagtt |
20748645 |
T |
|
| Q |
478 |
atgagaagatacatgcttgtcctaaagattgc |
509 |
Q |
| |
|
|||||||||||||||||||||| || |||||| |
|
|
| T |
20748646 |
atgagaagatacatgcttgtccaaatgattgc |
20748677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 14485267 - 14485507
Alignment:
| Q |
1 |
acaataacatcatatgcccgtgcttacattgttgttacagaacagttagtgcggagcatttgcaagatcacttaatatgtaatggaatcgatgaaagcta |
100 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14485267 |
acaataacatcatatgcccatgcttagaatgttgttacagaacagttagtgcggagcatttgcaagatcacttaatatgtaatggaatcgatgaaagcta |
14485366 |
T |
|
| Q |
101 |
tacatgttggacaatgcacggggaagaagaaactgagtctgctggtttgaggagtaatgtgagagatacgtcaaatgattatgagtttgatcgagtcgaa |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14485367 |
tacatgttggaca------------gaagaaactgagtctgctggtttgaggagtaatgtgagagatacgtcaaatgattatgagtttgatcgagtcgaa |
14485454 |
T |
|
| Q |
201 |
gagtttatgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttga |
253 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14485455 |
gagtttatgaatgaaattgaaaaagatcttcgtgattgtcccgaaatgtttga |
14485507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 20748211 - 20748278
Alignment:
| Q |
58 |
atttgcaagatcacttaatatgtaatggaatcgatgaaagctatacatgttggacaatgcacggggaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20748211 |
atttgcaagatcacttaatatgtaatggaattgataaaagctatacatgttggacaatgcacggggaa |
20748278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 178 - 509
Target Start/End: Original strand, 142443 - 142774
Alignment:
| Q |
178 |
attatgagtttgatcgagtcgaagagtttatgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagat |
277 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||| ||||||||| ||||| ||||||| ||| ||||||||||| || |||||| |||| || ||| |
|
|
| T |
142443 |
attatgagtttgatcgagttgaagaaattctgaatgtaattgaagatgatctccgtgattttcctaaaatgtttgagagggtagtaattgatgcagagac |
142542 |
T |
|
| Q |
278 |
gccattgtatgatggatgtgctaaattcacaagattgtctacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttaca |
377 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||| ||| |
|
|
| T |
142543 |
accattgtatgaaggatgtactaaattcacaagattgtctacgatcataaaattgtataagttaaaagcaggcaatggatggtctgataggagcttcaca |
142642 |
T |
|
| Q |
378 |
gacttgctaactctgttaaaagatatgttgcctgagaataacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagtt |
477 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
142643 |
gacttgctaactttgttaaaagatattttgcctaagaataacgtgctccctagtcgaacctatgaggctaaacgattgttatgttctattggcatgagtt |
142742 |
T |
|
| Q |
478 |
atgagaagatacatgcttgtcctaaagattgc |
509 |
Q |
| |
|
|||||||||||||||||||||| || |||||| |
|
|
| T |
142743 |
atgagaagatacatgcttgtccaaatgattgc |
142774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 178 - 509
Target Start/End: Original strand, 137219 - 137550
Alignment:
| Q |
178 |
attatgagtttgatcgagtcgaagagtttatgaatgaaattgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagat |
277 |
Q |
| |
|
||||||||||||||| ||| ||||| || |||||| ||||||||| ||||| ||||||| ||| ||||||||||| || |||||| |||| || ||| |
|
|
| T |
137219 |
attatgagtttgatcaagttgaagaaattctgaatgtaattgaagatgatctccgtgattttcctaaaatgtttgagagggtagtaattgatgcagagac |
137318 |
T |
|
| Q |
278 |
gccattgtatgatggatgtgctaaattcacaagattgtctacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttaca |
377 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||| ||| |
|
|
| T |
137319 |
accattgtatgaaggatgtactaaattcacaagattgtctacgatcataaaattgtataagttaaaagcaggcaatggatggtctgataggagcttcaca |
137418 |
T |
|
| Q |
378 |
gacttgctaactctgttaaaagatatgttgcctgagaataacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagtt |
477 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
137419 |
gacttgctaactttgttaaaagatattttgcctaagaataacgtgctccctagtcgaacctatgaggctaaacgattgttatgttctattggcatgagtt |
137518 |
T |
|
| Q |
478 |
atgagaagatacatgcttgtcctaaagattgc |
509 |
Q |
| |
|
|||||||||||||||||||||| || |||||| |
|
|
| T |
137519 |
atgagaagatacatgcttgtccaaatgattgc |
137550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 137084 - 137151
Alignment:
| Q |
58 |
atttgcaagatcacttaatatgtaatggaatcgatgaaagctatacatgttggacaatgcacggggaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
137084 |
atttgcaagatcacttaatatgtaatggaattgataaaagctatacatgttggacaatacacggggaa |
137151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 142308 - 142375
Alignment:
| Q |
58 |
atttgcaagatcacttaatatgtaatggaatcgatgaaagctatacatgttggacaatgcacggggaa |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
142308 |
atttgcaagatcacttaatatgtaatggaattgataaaagctatacatgttggacaatacacggggaa |
142375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 509
Target Start/End: Complemental strand, 130458 - 130166
Alignment:
| Q |
217 |
ttgaagaagatcttcgtgattgtcccgaaatgtttgagtggctagtaagtgattcaaagatgccattgtatgatggatgtgctaaattcacaagattgtc |
316 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| | | || ||||||||| ||| ||||| || ||||| || |||||||||||| |||| |
|
|
| T |
130458 |
ttgaagaagatcttcaggattgtcctgaaatgtttgagagattggttagtgattcagagaaaccattatacgatggttgcagcaaattcacaagaatgtc |
130359 |
T |
|
| Q |
317 |
tacgatcttaaaattgtataacttaaaagcacgcaatggatggtctgataagagctttacagacttgctaactctgttaaaagatatgttgcctgagaat |
416 |
Q |
| |
|
| | | || || ||||| || ||||||| | ||||||||||||||||| ||||| ||||||||| |||| || | | ||||||| ||| || || |
|
|
| T |
130358 |
tgcagtattgaagttgtacaatataaaagcgagaaatggatggtctgataaaagcttcacagacttgttaacccttctgatagatatgctgctaaaggat |
130259 |
T |
|
| Q |
417 |
aacgtgctccctagtcgaacctatgaggctaaacagatgttacgttctattggcatgagttatgagaagatacatgcttgtcctaaagattgc |
509 |
Q |
| |
|
|| || || |||||| ||| |||||| || ||| | ||||| | || ||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
130258 |
aatgttcttcctagtagaaactatgaagccaaaaaaatgttgtgctcgattggcatgagttatgaaaagatacacgcttgtcctaacgattgc |
130166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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