View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_low_13 (Length: 497)

Name: NF11400_low_13
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_low_13
NF11400_low_13
[»] chr3 (17 HSPs)
chr3 (169-483)||(51231143-51231462)
chr3 (64-163)||(49308124-49308223)
chr3 (20-160)||(53467188-53467341)
chr3 (67-155)||(37915410-37915498)
chr3 (106-163)||(49308832-49308889)
chr3 (65-118)||(50704311-50704364)
chr3 (64-155)||(1093175-1093265)
chr3 (111-155)||(50703745-50703789)
chr3 (107-155)||(55336841-55336888)
chr3 (124-155)||(51149164-51149195)
chr3 (109-155)||(18387649-18387694)
chr3 (68-130)||(20111861-20111923)
chr3 (31-65)||(50704264-50704298)
chr3 (123-160)||(55337600-55337637)
chr3 (123-163)||(25080810-25080850)
chr3 (64-92)||(26250201-26250229)
chr3 (29-65)||(37915513-37915549)
[»] chr4 (8 HSPs)
chr4 (20-155)||(51702669-51702817)
chr4 (66-155)||(49648192-49648281)
chr4 (27-161)||(24844081-24844228)
chr4 (68-163)||(33114078-33114176)
chr4 (107-160)||(11380990-11381042)
chr4 (65-154)||(49479909-49479997)
chr4 (33-65)||(33114192-33114224)
chr4 (123-163)||(33352123-33352163)
[»] chr8 (3 HSPs)
chr8 (67-163)||(20105031-20105127)
chr8 (20-65)||(20104971-20105016)
chr8 (123-163)||(37550955-37550995)
[»] scaffold0136 (2 HSPs)
scaffold0136 (68-159)||(23689-23780)
scaffold0136 (33-65)||(23641-23673)
[»] chr7 (9 HSPs)
chr7 (64-155)||(32577328-32577419)
chr7 (67-163)||(12293460-12293556)
chr7 (66-162)||(42745629-42745725)
chr7 (64-159)||(12294229-12294324)
chr7 (67-161)||(9146060-9146154)
chr7 (112-155)||(7831635-7831678)
chr7 (64-128)||(32576627-32576690)
chr7 (27-65)||(32577279-32577317)
chr7 (27-60)||(9146174-9146207)
[»] chr5 (5 HSPs)
chr5 (64-155)||(41609509-41609600)
chr5 (64-157)||(14098382-14098475)
chr5 (27-154)||(210356-210496)
chr5 (107-162)||(29630386-29630440)
chr5 (120-155)||(14098307-14098342)
[»] chr2 (8 HSPs)
chr2 (66-155)||(42847934-42848023)
chr2 (65-155)||(1677572-1677662)
chr2 (66-155)||(42848613-42848702)
chr2 (66-155)||(45632379-45632467)
chr2 (20-64)||(32394910-32394954)
chr2 (27-65)||(1678281-1678319)
chr2 (64-118)||(1678331-1678385)
chr2 (64-130)||(30266349-30266415)
[»] chr1 (4 HSPs)
chr1 (107-163)||(51097509-51097564)
chr1 (112-160)||(36930179-36930227)
chr1 (123-163)||(36681522-36681562)
chr1 (112-149)||(43250883-43250920)
[»] chr6 (1 HSPs)
chr6 (70-130)||(18970615-18970675)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 169 - 483
Target Start/End: Original strand, 51231143 - 51231462
Alignment:
Q  169 tcaaattacaaatgcaggcctatccttttcaaactattattttccaagtcagctatgaatagaatttaacaaactaaaaacc-actcgtaaaacaaacaa 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51231143 tcaaattacaaatgcaggcctatccttttcaaactattattttccaagtcagctatgaatagaatttaacaaactaaaaacccactcgtaaaacaaacaa 51231242  T
Q  268 tataatgatttcatttccctatagttaagaaccactcccataacatcactctacacgataaatcttattgtcaaaaatgattgattcggatttaagaact 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51231243 tataatgatttcatttccctatagttaagaaccactcccataacatcactctacacgataaatcttattgtcaaaaatgattgattcggatttaagaact 51231342  T
Q  368 aacattggttctagctagaaataaggtgctttgtaatttggcatgtatgtgag----ttgcttattctgtggggtatctttatttaggtcccttccatat 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||    
T  51231343 aacattggttctagctagaaataaggtgctttgtaatttggcatgtatgtgagttgcttgcttattctgtggggtatctttatttaggtcccttccatat 51231442  T
Q  464 ggctgtatatgtacgcagtg 483  Q
    |||||||||||||| |||||    
T  51231443 ggctgtatatgtacacagtg 51231462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 49308223 - 49308124
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 163  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  49308223 gagcaattaaatctgaagcgttgattttgatccaatgatccaaattaattcctctcatcctctcattataactactcctctcacttgatatgccctctat 49308124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 53467188 - 53467341
Alignment:
Q  20 ggtaggcagagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaattaaatctgaagcgttgattttgattcaatgatccag 106  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||             |||||||||| |||||||||||||||||| |||||||||||    
T  53467188 ggtaggcagagtggagaagataaaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatttgaagcgttgattttgatccaatgatccag 53467287  T
Q  107 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctc 160  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  53467288 attaattcctctcatcctctcattataactactcctcccacttgatatgccctc 53467341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 37915498 - 37915410
Alignment:
Q  67 caattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37915498 caattaaatctgaagcgttgattttgatccaatggtctagattaattcctctcatcctctcattataactactcctctcacttgatatg 37915410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 49308832 - 49308889
Alignment:
Q  106 gattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 163  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  49308832 gattaattcctctcatcctctcattataactactcctctcacttgatatgccctctat 49308889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 50704311 - 50704364
Alignment:
Q  65 agcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctct 118  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  50704311 agcaattaaatctgaagcgttgattttgatccaatggtccagattaattcctct 50704364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 1093265 - 1093175
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    ||||||| | ||||||| ||||||||| ||| ||| | || | |||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  1093265 gagcaataacatctgaaacgttgatttagatccaacggtctaaattaattcctctcatc-tctcattgtaactactcctctcacttgatatg 1093175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 50703789 - 50703745
Alignment:
Q  111 attcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  50703789 attcctctcatcctctcattttaactactcctctcacttgatatg 50703745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 55336888 - 55336841
Alignment:
Q  107 attaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  55336888 attaaatcctcttatc-tctcattataattactcctctcacttgatatg 55336841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 51149164 - 51149195
Alignment:
Q  124 tctcattataactactcctctcacttgatatg 155  Q
    ||||||||||||||||||||||||||||||||    
T  51149164 tctcattataactactcctctcacttgatatg 51149195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 18387694 - 18387649
Alignment:
Q  109 taattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  18387694 taattcctcttatc-tctcattgtaactactcctctcatttgatatg 18387649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 20111861 - 20111923
Alignment:
Q  68 aattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcatt 130  Q
    |||||||| |||||||| ||||| ||| ||| |||| | |||||||||||| |||||||||||    
T  20111861 aattaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcatt 20111923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 50704264 - 50704298
Alignment:
Q  31 tggagaagatgaaaggtagagattgtagtgcatga 65  Q
    ||||||||||||||||||||| |||||||||||||    
T  50704264 tggagaagatgaaaggtagaggttgtagtgcatga 50704298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 55337600 - 55337637
Alignment:
Q  123 ctctcattataactactcctctcacttgatatgtcctc 160  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  55337600 ctctcattataattactcctctcacttgatatgccctc 55337637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 25080850 - 25080810
Alignment:
Q  123 ctctcattataactactcctctcacttgatatgtcctctat 163  Q
    |||||| |||||| ||||||||||||||||||| |||||||    
T  25080850 ctctcactataacaactcctctcacttgatatgccctctat 25080810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 26250229 - 26250201
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttg 92  Q
    |||||||||||||||||||||||||||||    
T  26250229 gagcaattaaatctgaagcgttgattttg 26250201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 37915549 - 37915513
Alignment:
Q  29 agtggagaagatgaaaggtagagattgtagtgcatga 65  Q
    |||||||||||||||||||| || |||||||||||||    
T  37915549 agtggagaagatgaaaggtataggttgtagtgcatga 37915513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 51702817 - 51702669
Alignment:
Q  20 ggtaggcagagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaattaaatctgaagcgttgattttgattcaatgatccag 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||             ||||||||||||||| ||||||||||||| |||||||||||    
T  51702817 ggtaggcagagtggagaagatgaaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatctgaaacgttgattttgatccaatgatccag 51702718  T
Q  107 attaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||    
T  51702717 attaattcctctcatcctctcatcataactactcctctcacttgatatg 51702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 49648192 - 49648281
Alignment:
Q  66 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    ||||||||||||||||||||||||| |||| |||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  49648192 gcaattaaatctgaagcgttgatttagattaaatggtccaaattaattcctctcaccctctcattataactactcctctcacttgatatg 49648281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 24844228 - 24844081
Alignment:
Q  27 agagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaattaaatctgaagcgttgattttgattcaatgatccagattaatt 113  Q
    ||||||||||||||||||||||||| |||||||||||||             ||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  24844228 agagtggagaagatgaaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcagattaatt 24844129  T
Q  114 cctcttatcctctcattataactactcctctcacttgatatgtcctct 161  Q
     |||| || |||||||| || ||| ||||||||||||||||| |||||    
T  24844128 tctctcattctctcattctagctattcctctcacttgatatgccctct 24844081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 33114176 - 33114078
Alignment:
Q  68 aattaaatctgaagcgttgattttgattcaatgatccagatta---attcctcttatcctctcattataactactcctctcacttgatatgtcctctat 163  Q
    ||||||||||||||||||||||||||| ||||| || | ||||   |||| | | ||||||||||||||  ||||||||||||||||||||||||||||    
T  33114176 aattaaatctgaagcgttgattttgatccaatggtctatattattaattcttttcatcctctcattatagttactcctctcacttgatatgtcctctat 33114078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 11380990 - 11381042
Alignment:
Q  107 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctc 160  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  11380990 attaattcctctcatc-tctcattataactactcctctcacttgatatgtcctc 11381042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 49479997 - 49479909
Alignment:
Q  65 agcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatat 154  Q
    |||||||||||||||| ||||||||||||| |||||||  | |||| ||  ||| || |||| |||||||||  ||||||||||||||||    
T  49479997 agcaattaaatctgaaacgttgattttgatccaatgatttaaattagtttatctcat-ctctaattataactcatcctctcacttgatat 49479909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 33114224 - 33114192
Alignment:
Q  33 gagaagatgaaaggtagagattgtagtgcatga 65  Q
    ||||||||||||||||||| |||||||||||||    
T  33114224 gagaagatgaaaggtagaggttgtagtgcatga 33114192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 33352123 - 33352163
Alignment:
Q  123 ctctcattataactactcctctcacttgatatgtcctctat 163  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  33352123 ctctcactataacaactcatctcacttgatatgtcctctat 33352163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 20105031 - 20105127
Alignment:
Q  67 caattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 163  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  20105031 caattaaatctgaagcgttgattttgatccaatgattcagattaattcctctcatcctctcattataactagtcctctcacttgatatgccctctat 20105127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 20104971 - 20105016
Alignment:
Q  20 ggtaggcagagtggagaagatgaaaggtagagattgtagtgcatga 65  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||    
T  20104971 ggtagacagagtggagaagatgaaagatagaggttgtagtgcatga 20105016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 37550955 - 37550995
Alignment:
Q  123 ctctcattataactactcctctcacttgatatgtcctctat 163  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  37550955 ctctcactataacaactcctctcacttgatatgtcctctat 37550995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 23689 - 23780
Alignment:
Q  68 aattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcct 159  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  23689 aattaaatctgaagcgttgattttgatccaatgatctatattaattcctctcatcctctcattataactactactctcacttgatatgtcct 23780  T

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Target: scaffold0136; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 23641 - 23673
Alignment:
Q  33 gagaagatgaaaggtagagattgtagtgcatga 65  Q
    ||||||||||||||||||| |||||||||||||    
T  23641 gagaagatgaaaggtagaggttgtagtgcatga 23673  T

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Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 32577328 - 32577419
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    ||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  32577328 gagcaattaaatctgaagcgttgattttgatccaatggttcagattaattcctctcatcctctcattctaacaactcctctcacttgatatg 32577419  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 12293556 - 12293460
Alignment:
Q  67 caattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 163  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||  |  |||||||||||||||||||| |||||||    
T  12293556 caattaaatctgaagcgttgattttgatccaatgatccagattaatttctctcatcctctcatttaagttactcctctcacttgatatgccctctat 12293460  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 42745725 - 42745629
Alignment:
Q  66 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctcta 162  Q
    ||||||||||||||||||||||||| ||| ||| | |||| |||||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||    
T  42745725 gcaattaaatctgaagcgttgatttagatccaacggtccaaattaattcctctcatcctcttattataactactactctcacttgatatgccctcta 42745629  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 12294229 - 12294324
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcct 159  Q
    |||||||||||| |||||||||||||||||| ||||| | ||||||||||| ||| |||||||||||  || ||||||||||||||||||||||||    
T  12294229 gagcaattaaatatgaagcgttgattttgatccaatggttcagattaattcatctcatcctctcatttaaattactcctctcacttgatatgtcct 12294324  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 9146154 - 9146060
Alignment:
Q  67 caattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctct 161  Q
    |||||||||||||||||||||||||||| |||   |||| |||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||    
T  9146154 caattaaatctgaagcgttgattttgatccaaatgtccaaattaattcctctcatcctctcattataattacacctctcacttgatatggcctct 9146060  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 7831678 - 7831635
Alignment:
Q  112 ttcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  7831678 ttcctctcatcctctcattataactactcctctcacttgatatg 7831635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 32576690 - 32576627
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctca 128  Q
    |||||||||||| ||||||||||||||| ||||||||  |||||||||||| ||| |||||||||    
T  32576690 gagcaattaaatttgaagcgttgattttaattcaatg-gccagattaattcttctcatcctctca 32576627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 32577279 - 32577317
Alignment:
Q  27 agagtggagaagatgaaaggtagagattgtagtgcatga 65  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  32577279 agagtggagaagatgaaaggtagaggttgtagagcatga 32577317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 9146207 - 9146174
Alignment:
Q  27 agagtggagaagatgaaaggtagagattgtagtg 60  Q
    ||||||||||||||||||||||||| ||||||||    
T  9146207 agagtggagaagatgaaaggtagaggttgtagtg 9146174  T

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Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 41609600 - 41609509
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    |||||||||||||||| |||||||||||||| ||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41609600 gagcaattaaatctgatgcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatg 41609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 14098382 - 14098475
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtc 157  Q
    ||||||||||||||||||||||||||||| | ||||| |||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  14098382 gagcaattaaatctgaagcgttgattttgttccaatggtccaaattaattcctgtcatcctctcattgtaactactcctctcacttgatatgtc 14098475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 210356 - 210496
Alignment:
Q  27 agagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaattaaatctgaagcgttgattttgattcaatgatccagattaatt 113  Q
    ||||||||||||||||||||||||| |||||||||||||             |||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  210356 agagtggagaagatgaaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatctaaagcgttgattttgatccaatggtccagattaatt 210455  T
Q  114 cctcttatcctctcattataactactcctctcacttgatat 154  Q
    ||| | ||||||||||| |||||||| |||||| |||||||    
T  210456 cctttcatcctctcattctaactacttctctcatttgatat 210496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 29630440 - 29630386
Alignment:
Q  107 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctcta 162  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  29630440 attaattcctctcatc-tctcattataactactcctctcacttgatatgtcctcta 29630386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 14098342 - 14098307
Alignment:
Q  120 atcctctcattataactactcctctcacttgatatg 155  Q
    |||||||||||||||||||||||||| |||||||||    
T  14098342 atcctctcattataactactcctctctcttgatatg 14098307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 42848023 - 42847934
Alignment:
Q  66 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    ||||||||||||||||||||||||| ||| ||||| |||| | |||||||||| | |||||||||||||||| |||||||||||||||||    
T  42848023 gcaattaaatctgaagcgttgatttagatccaatggtccaaactaattcctctcaccctctcattataactattcctctcacttgatatg 42847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 1677662 - 1677572
Alignment:
Q  65 agcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    ||||||||||||||||||||||||||| |||||||  | ||||||||||  | | ||||||||||| ||||||||||||||||||||||||    
T  1677662 agcaattaaatctgaagcgttgattttaattcaatagttcagattaatttttttcatcctctcattttaactactcctctcacttgatatg 1677572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 42848613 - 42848702
Alignment:
Q  66 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    ||||||||||||||||||||||||| ||||||| | |||| |||||||| ||| | |||||| |||||||||||||||| | ||||||||    
T  42848613 gcaattaaatctgaagcgttgatttagattcaacggtccaaattaattcttctcaccctctccttataactactcctctaatttgatatg 42848702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 45632379 - 45632467
Alignment:
Q  66 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 155  Q
    |||||||||||| |||||||||||| ||| ||| | |  | |||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  45632379 gcaattaaatctaaagcgttgatttagatccaacggtttaaattaattcctctcatc-tctcattgtaactactcctctcacttgatatg 45632467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 32394910 - 32394954
Alignment:
Q  20 ggtaggcagagtggagaagatgaaaggtagagattgtagtgcatg 64  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  32394910 ggtaggcagagtggagaagatgaaaggtagaggttgtagtgcatg 32394954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 1678281 - 1678319
Alignment:
Q  27 agagtggagaagatgaaaggtagagattgtagtgcatga 65  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  1678281 agagtggagaagatgaaaggtagaggttgtagtgcatga 1678319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 1678331 - 1678385
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctct 118  Q
    |||||||||||| | ||||||||||||||||  |||| | |||||||||||||||    
T  1678331 gagcaattaaatttaaagcgttgattttgatcaaatggttcagattaattcctct 1678385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 30266415 - 30266349
Alignment:
Q  64 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcatt 130  Q
    |||||||||||||||||| |||||||| ||| ||| | || | |||||||||||| | |||||||||    
T  30266415 gagcaattaaatctgaagtgttgatttagatccaacggtctaaattaattcctctcaccctctcatt 30266349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 51097564 - 51097509
Alignment:
Q  107 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 163  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  51097564 attaattcctctcatc-tctcattataactactcctctcacttgatatgtcctctat 51097509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 36930179 - 36930227
Alignment:
Q  112 ttcctcttatcctctcattataactactcctctcacttgatatgtcctc 160  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  36930179 ttcctctcatcctctcattataactacttctctcacttgatatgccctc 36930227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 36681562 - 36681522
Alignment:
Q  123 ctctcattataactactcctctcacttgatatgtcctctat 163  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  36681562 ctctcactataacaactcctctcacttgatatgtcctctat 36681522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 43250920 - 43250883
Alignment:
Q  112 ttcctcttatcctctcattataactactcctctcactt 149  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  43250920 ttcctctcatcctctcattataattactcctctcactt 43250883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 18970615 - 18970675
Alignment:
Q  70 ttaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcatt 130  Q
    |||||| |||||||| ||||| ||| ||| |||| | |||||||||||| |||||||||||    
T  18970615 ttaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcatt 18970675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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