View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_14 (Length: 471)
Name: NF11400_low_14
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 24566954 - 24567327
Alignment:
| Q |
1 |
aattgaaatcaaaattctgaatatggagggatgaaatccgtgcatgattaattgggatgannnnnnnnnnnnnntaattgagattaattaatgtatgaac |
100 |
Q |
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| T |
24566954 |
aattgaaatcaaaattctgaatatggagggatgaaatccgtgcatgattaattgggatgatttttttaaaaaaataattgagattaattaatgtatgaac |
24567053 |
T |
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| Q |
101 |
atttaaagcttgcgctaaagatgaggcattgcatttttggtggggtttatgaaaattggcaagattcttctatgatttatgggtagctttaagagtcaat |
200 |
Q |
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| T |
24567054 |
atttaaagcttgcgctaaagatgaggcattgcatttttggtggggtttatgaaaattggcaagattcttctatgatttatgggtagctttaagagtcaat |
24567153 |
T |
|
| Q |
201 |
aaaagttcagctctaaatttaatgctgctctagtctaaagtttcatggctatcagcagttacctatgcacattatttgtgaagaaaagtttatataaaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24567154 |
aaaagttcagctctaaatttaatgctgctctagtctaaagtttcatggctatcagcacttacctatgcacattatttgtgaagaaaagtttatataaaag |
24567253 |
T |
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| Q |
301 |
ttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacgattgattcttcatg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24567254 |
ttggcacaatctttctggtgatcctttaacttggtctaaaataaattatatatgtacacgattgattcttcatg |
24567327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 452
Target Start/End: Original strand, 24567369 - 24567405
Alignment:
| Q |
416 |
aatgcaaacatctagattctatctttactggtatagt |
452 |
Q |
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| T |
24567369 |
aatgcaaacatctagattctatctttactggtatagt |
24567405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 16615418 - 16615447
Alignment:
| Q |
1 |
aattgaaatcaaaattctgaatatggaggg |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16615418 |
aattgaaatcaaaattctgaatatggaggg |
16615447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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