View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_15 (Length: 468)
Name: NF11400_low_15
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 20 - 450
Target Start/End: Complemental strand, 38723443 - 38723014
Alignment:
| Q |
20 |
ataaggtcatacacacataaatatatagatacacattaaatgttaatactcattgccatttaccaaactaaccctcatttataagtaaatagagacagac |
119 |
Q |
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| T |
38723443 |
ataaggtcatacacacataaatatatagatacacattaaatgttaatgctcattgccatttaccaaactaaccctcatttataagtaaatagagacaaac |
38723344 |
T |
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| Q |
120 |
ttagtatatgttctgacgcatgacagtgttgaagggtatgctcattttattttttctactctttgaacaaaattagtagatagaattaaatataagtggg |
219 |
Q |
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| T |
38723343 |
t-agtatatgttctgacgcatgacagtgttgaagggtatgctcattttattttttctactctttgaacaaaattagtagatagaattaaatataagtggg |
38723245 |
T |
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| Q |
220 |
cactaattttttgtggaactatatcaggaactggagtagttgtattatgggaccccaatttcaaactatgatcaaataaggtgtaatcaattaatgtaca |
319 |
Q |
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| T |
38723244 |
cactaattttttgtggaactatatcaggaactggagtaattgtattatgggaccccaatttcaaactatgatcaaataaggtgtaatcaattaatgtaca |
38723145 |
T |
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| Q |
320 |
tatcagattgaagataatccattgacattggggatggattttggcacagaaggaagaaaattggttaagttcatacctgtaatccattttcaaaatgctc |
419 |
Q |
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| T |
38723144 |
tatcagattgaagataatccattgacattggggatggattttggcacagaaggaagaaaattggttaagttcatagctgtaatccattttcaaaatgctc |
38723045 |
T |
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| Q |
420 |
aaatttggtgtagtggtcactcaggtctgtg |
450 |
Q |
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| T |
38723044 |
aaatttggtgtagtggtcactcaggtctgtg |
38723014 |
T |
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