View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_16 (Length: 465)
Name: NF11400_low_16
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 50971957 - 50971505
Alignment:
| Q |
1 |
tttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctataga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50971957 |
tttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctataga |
50971858 |
T |
|
| Q |
101 |
aaatggaagcagcaaggttgataaagaaaatactgtccaaaagaatgaaattctcttcaggattatatgctctttatccagtccaaaagaaaataccgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50971857 |
aaatggaagcagcaaggttgataaagaaaatactgtccaaaagaatgaaattctcttcaggattatatgctctttatccagtccaaaagaaaataccgta |
50971758 |
T |
|
| Q |
201 |
tgttgaagttatacggtaaatctgttcatcattttatatgctctttatctctgtttctctattctctttctttgtttcactgctca-nnnnnnncttagg |
299 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
50971757 |
tgttgaagttatatggtaaatctgttcatcattttatatgctctttatctctttttctctattctctttctttgtttcactgctcattttttttcttagg |
50971658 |
T |
|
| Q |
300 |
ctatgacttgagttttgaggtattttggtgtttggagttatgtttgattttcttctttatgttgattaaataacttaaagaaatatggtttgtctaatga |
399 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50971657 |
ctatgacttgagttttgaggtattttggtatttggagttatgttttattttcttctttatgttgattaaataacttaaagaaatatggtttgtctaatga |
50971558 |
T |
|
| Q |
400 |
tattaggatttgctggatcttcttcccatc--caccagaccccaagaagaatc |
450 |
Q |
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| T |
50971557 |
tattaggatttgctggatcttcttcccatccacaccacaccccaagaagaatc |
50971505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 343
Target Start/End: Complemental strand, 17573802 - 17573708
Alignment:
| Q |
249 |
ctctgtttctctattctctttctttgtttcactgctcannnnnnncttaggctatgacttgagttttgaggtattttggtgtttggagttatgtt |
343 |
Q |
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|||||||||||| ||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||| |
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| T |
17573802 |
ctctgtttctctgctctctttctctgtttcactgctcattttcttcttaggccatgacttaagttttgaggtattttggaatttggagttatgtt |
17573708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 9008784 - 9008945
Alignment:
| Q |
1 |
tttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctataga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| |
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| T |
9008784 |
tttatagtctaactcaatataattgcttagatttcatgcaggacacacttcacaaccacattggcatcaatgggtatatagatgatgttgaagctataga |
9008883 |
T |
|
| Q |
101 |
aaatggaagcagcaaggttgataaagaaaatactgtccaaaagaatgaaattctcttcagga |
162 |
Q |
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|
| T |
9008884 |
aaatggaagcaacaaggttgataaagaaaatacagtccaaaagaatgaaattctcttcagga |
9008945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 16519630 - 16519490
Alignment:
| Q |
10 |
taactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaatggaag |
109 |
Q |
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|
|||||||||||||||| ||||| ||||||||||| ||||||||||| | || ||| |||| |||||| |||||||||| ||||||||||||||||||||| |
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| T |
16519630 |
taactcaatataattgtttaaacttcatgcaggaaacacttcacaagcacaatggtagcagtgagtccatagatgatgctgaagctatagaaaatggaag |
16519531 |
T |
|
| Q |
110 |
cagcaaggttgataaagaaaatactgtccaaaagaatgaaa |
150 |
Q |
| |
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|| |||||||| |||||||| | || ||||||||||||| |
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| T |
16519530 |
caaaaaggttgacaaagaaaagatagttcaaaagaatgaaa |
16519490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 36870961 - 36870879
Alignment:
| Q |
34 |
tcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaatggaagcagcaag |
116 |
Q |
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||||||| || ||||||||||||| |||||| |||||||||||||||||||| |||||||| | | | |||||||||| |||| |
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| T |
36870961 |
tcatgcaagaaacacttcacaaccacattggtagcaatgagtctatagatgacgttgaagccacaaacaatggaagcaacaag |
36870879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 407 - 450
Target Start/End: Complemental strand, 26189879 - 26189836
Alignment:
| Q |
407 |
atttgctggatcttcttcccatccaccagaccccaagaagaatc |
450 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
26189879 |
atttgctggatcttcttcccatccaccacaccccaacaagaatc |
26189836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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