View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_19 (Length: 461)
Name: NF11400_low_19
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 18192233 - 18192663
Alignment:
| Q |
18 |
aagaaaaacactatctttacaattacgtgggtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcataag-cttccacttttct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||| |
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| T |
18192233 |
aagaaaaacactatctttacaattacgtgggtgaatccagctgcacactaagatctcacag-ccacagcaatttgtggctcacaaaacttccacttttct |
18192331 |
T |
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| Q |
117 |
gatgtggcattgctttccaactttttgacctttataaaacttcttcacataaacacataaaccattgtacctccnnnnnnnnnnnnnnnnn--cttttct |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
18192332 |
gatgtggcattgctttccaactttttgacctttataaaacttcttcacataaacacataaaccatagtacctccctctctctctctttctctccttttct |
18192431 |
T |
|
| Q |
215 |
tcattatcaagtaaacagaacnnnnnnncaacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaac |
314 |
Q |
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| T |
18192432 |
tcagtatcaagtaaacagaacaaaaaaacaacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaac |
18192531 |
T |
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| Q |
315 |
aatttttcaaacacgcaacaccgatgattattcctcagagtttt---ctcctcttgctcatgaagatttctctgatcatagtcttcattcatctttatct |
411 |
Q |
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| T |
18192532 |
aatttttcaaacacgcaacaccgacgattattcctcggagttttctcctcctcttggtcatgaagatttctctgatcatagtcttcattcatctttatct |
18192631 |
T |
|
| Q |
412 |
tcatcttcatcttctccaaacaaacacgattc |
443 |
Q |
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| T |
18192632 |
tcatcttcatcttctccaaacgaacatgattc |
18192663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 18196767 - 18196939
Alignment:
| Q |
19 |
agaaaaacactatctttacaattacgtgggtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcataag-cttccacttttctg |
117 |
Q |
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| T |
18196767 |
agaacaacactatctttacaattaagtgtgtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcacaaaacttccacttttctg |
18196866 |
T |
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| Q |
118 |
atgtggcattgctttccaactttttgacctttataaaacttcttcacataaacacataaaccattgtacctcc |
190 |
Q |
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| T |
18196867 |
atgtggcattgctttccaactttttgacctttataaaacttcttcacagaaacacataaaccattgtacctcc |
18196939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 243 - 419
Target Start/End: Original strand, 18187459 - 18187648
Alignment:
| Q |
243 |
caacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaacaatttttcaaacacgcaacaccg----- |
337 |
Q |
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| T |
18187459 |
caacaaaaacttcttcaacatatatacctgaga--tgactaatgattcaaccatgaagcttttcgggagaaccatttttcaaaaacacaacaccgatgtt |
18187556 |
T |
|
| Q |
338 |
-------atgattattcctcagagttttctcc---tcttgctcatgaagatttctctgatcatagtcttcattcatctttatcttcatcttc |
419 |
Q |
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| T |
18187557 |
cctaccaatgattcttcctcagaattttctcctcatcttgctcatgaagatttctctgatcatagtcttcattcatctttatcttcatcttc |
18187648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 18187248 - 18187394
Alignment:
| Q |
48 |
gtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcataag-cttccacttttctgatgtggcattgctttcc---aactttttg |
143 |
Q |
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||||||||| ||| |||||||||||||| |||||| || ||||||||||||| || ||| | ||||||||||||||| | |||||| ||||||||| |
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| T |
18187248 |
gtgaatccagctgaacactaagatctcataggccaaaacaatttgtggctcacaaaactttcccttttctgatgtggcttggctttcttctaactttttg |
18187347 |
T |
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| Q |
144 |
acctttataaaacttcttcacataaacacataaaccattgtacctcc |
190 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18187348 |
acctatataaaacctcttcacataaacacataaaccattgtacctcc |
18187394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 18229109 - 18229175
Alignment:
| Q |
274 |
gagatgactaatgattcaaccataaagcttttcgggagaacaatttttcaaacacgcaacaccgatg |
340 |
Q |
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| T |
18229109 |
gagatgactaatgattcaaccataaagcttttcgggagaaccatttttcaaacacacaacaccgatg |
18229175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 419
Target Start/End: Original strand, 18197135 - 18197205
Alignment:
| Q |
349 |
tcagagttttctcctcttgctcatgaagatttctctgatcatagtcttcattcatctttatcttcatcttc |
419 |
Q |
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| T |
18197135 |
tcagaattttctccgcttcctcatgaagatttatctcatcatagtcttcattcatctatgtcttcctcttc |
18197205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 18228965 - 18229028
Alignment:
| Q |
128 |
gctttccaactttttgacctttataaaa---cttcttcacataaacacataaaccattgtacctcc |
190 |
Q |
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| T |
18228965 |
gctttctaactttttgacctttatgaaacctcttcttcacataaacac--aaaccattgtacctcc |
18229028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 18197013 - 18197089
Alignment:
| Q |
243 |
caacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaacaattttt |
321 |
Q |
| |
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|||||||||||| ||| ||| ||||||| |||| ||| |||| |||||||||||| |||||| |||||||| |||||| |
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| T |
18197013 |
caacaaaaacttattctacagatatacccgaga--tgattaataattcaaccataacgctttttgggagaacgattttt |
18197089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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