View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11400_low_20 (Length: 459)
Name: NF11400_low_20
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 28162674 - 28162238
Alignment:
| Q |
9 |
agcaaaggaaaaagaagtcatgtcaatttggtcatcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctc |
108 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28162674 |
agcaatggaaaaagaagtcatgtccatttggtcatcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctc |
28162575 |
T |
|
| Q |
109 |
actatattttacatcatatattatattttgcaagagtctgattccactacagataaaattaaaaatagaaaacaagaatttcagtgttaagcatctacaa |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28162574 |
actatattttacaccatatattatattttgcaagagtctgattccactacgaataaaattaaaaatagaaaacaagaatttcagtgttaagcatctacaa |
28162475 |
T |
|
| Q |
209 |
atattgagcaacgattctccttaactttggatataagattcggaagcaatagactt--nnnnnnnnnntctttatataaaaattagtttaaatcttgttt |
306 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
28162474 |
atattgagcaacgattctccataactttggatataagattcggaagcaatagacttaaaaaaaaaaaatctttataaaaaaattagtttaaatcttgttt |
28162375 |
T |
|
| Q |
307 |
cataggaaacgtatcgaatggcaattattaatgaaaaaatggacctgatgatgaacttactaattcttcatctagttgagaagggtcccctgaaagtata |
406 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28162374 |
cataggaaacctatcgaatggcaattattaatgaaaaaatggacctcatgatgaacttactaattcttcatctagttgagaagggtcccctgaaagtata |
28162275 |
T |
|
| Q |
407 |
gaaaaggataattagtcctctctgagtaccaaataat |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28162274 |
gaaaaggataattagtcctctctgagtaccaagtaat |
28162238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 28186723 - 28186281
Alignment:
| Q |
9 |
agcaaaggaaaaagaagtcatgtcaatttggtcatcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctc |
108 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28186723 |
agcaatggaaaaagaagtcatgtccatttggtcatcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctc |
28186624 |
T |
|
| Q |
109 |
actatattttacatcatatattatattttgcaagagtctgattccactacagataaaattaaaaatagaaaacaagaatttcagtgttaagcatctacaa |
208 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28186623 |
actat--tttacaccatatattatattttgcaagagtctgattccactacagataaaattaaaaatagaaaacaagaatttcagtgttaagcctctacaa |
28186526 |
T |
|
| Q |
209 |
atattgagcaacgattctccttaactttggatataagattcggaagcaatagac---------ttnnnnnnnnnntctttatataaaaattagtttaaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
28186525 |
atattgagcaacgattctccttaactttggatataagattcggaagcaatagactgaattttttttattttttattttttatataaaaattagtttaaat |
28186426 |
T |
|
| Q |
300 |
cttgtttcataggaaacgtatcgaatggcaattattaatgaaaaaatggacctgatgatgaacttactaattcttcatctagttgagaagggtcccctga |
399 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28186425 |
cttgtttcataggaaacctatcgaatggcaattattaatgaaaaaatggacctgatgatgaacttactaattcttcatctggttgagaagggtcccctga |
28186326 |
T |
|
| Q |
400 |
aagtatag-aaaaggataattagtcctctctgagtaccaaataat |
443 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28186325 |
aagtatagaaaaaggataattagtcctctctgagtaccaaataat |
28186281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 43 - 443
Target Start/End: Complemental strand, 28150728 - 28150329
Alignment:
| Q |
43 |
tcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctcactatattttacatcatatattatattttgcaag |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28150728 |
tcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctcactatattttacaccatatattatattttgcaag |
28150629 |
T |
|
| Q |
143 |
agtctgattccactacagataaaattaaaaatagaaaacaagaatttcagtgttaagcatctacaaatattgagcaacgattctccttaactttggatat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| || | |
|
|
| T |
28150628 |
agtctgattccactacagataaaattaaaaatagaaaacaagaatttcagtgttaagcatctacaaatattgagcaacaattc-ccttaagtttgaatgt |
28150530 |
T |
|
| Q |
243 |
aagattcggaagcaatagacttnnnnnnnnnntctttatataaaaattagtttaaatcttgtttcataggaaacgtatcgaatggcaattattaatgaaa |
342 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28150529 |
aagattcggaagcaatagacttaaaaaaaaaatctttatataagaattagtttaaatcttgtttcataggaaacctatcgaatggcaattattaatgaaa |
28150430 |
T |
|
| Q |
343 |
aaatggacctgatgatgaacttactaattcttcatctagttgagaagggtcccctgaaagtatagaaaaggataattagtcctctctgagtaccaaataa |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
28150429 |
caatggacctgatgatgaacttactaattcttcatctagttgagaagggtcccctgaaagtatagaaaatgataattagtcctctccgagtaccaaataa |
28150330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 28057220 - 28056800
Alignment:
| Q |
16 |
gaaaaagaagtcatgtcaatttggtcatcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctcactatat |
115 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28057220 |
gaaaaataactcatgtccatttggtcatcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctcactatat |
28057121 |
T |
|
| Q |
116 |
tttacat-------catatattatattttgcaagagtctgattccactacagataaaattaaaaatagaaaacaagaatttcagtgttaagcatctacaa |
208 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28057120 |
ttaacaattaacaccatatattatagtttgcaagagtctgattccactacagataaaattaaaaatagaaaacaagaatttcagtgtcaagcatctacaa |
28057021 |
T |
|
| Q |
209 |
atattgagcaacgattctccttaactttggatataagattcggaagcaatagacttnnnnnnnnnntctttatataaaaattagtttaaatcttgtttca |
308 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
28057020 |
atattgagcaacaattcctgttaactttggatataagattcagaagcaat---cttgtttaaa---tgtttatataaaaattagtttaaatcttgtttca |
28056927 |
T |
|
| Q |
309 |
taggaaacgtatcgaatggcaattattaatgaaaaaatggacctgatgatgaacttactaattcttcatctagttgagaagggtcccctgaaagtataga |
408 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |
|
|
| T |
28056926 |
aaggaaaccaatcgaatggcagttattaatgaaataatgggcctgatgatgaacttactaattcttcatcgatttgagaagggtcccctgaaagtataaa |
28056827 |
T |
|
| Q |
409 |
aaaggataattagtcctctctgagtac |
435 |
Q |
| |
|
|||| || ||||||||||||||||||| |
|
|
| T |
28056826 |
aaagaatcattagtcctctctgagtac |
28056800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 28067645 - 28067225
Alignment:
| Q |
16 |
gaaaaagaagtcatgtcaatttggtcatcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctcactatat |
115 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28067645 |
gaaaaataactcatgtccatttggtcatcaagatcttcctacacagatttaaatcactaaatgatatatcatatcttataatggatcaacctcactatat |
28067546 |
T |
|
| Q |
116 |
tttacat-------catatattatattttgcaagagtctgattccactacagataaaattaaaaatagaaaacaagaatttcagtgttaagcatctacaa |
208 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28067545 |
ttaacaattaacaccatatattatagtttgcaagagtctgattccactacagataaaattaaaaatagaaaacaagaatttcagtgtcaagcatctacaa |
28067446 |
T |
|
| Q |
209 |
atattgagcaacgattctccttaactttggatataagattcggaagcaatagacttnnnnnnnnnntctttatataaaaattagtttaaatcttgtttca |
308 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
28067445 |
atattgagcaacaattcctgttaactttggatataagattcagaagcaat---cttgtttaaa---tgtttatataaaaattagtttaaatcttgtttca |
28067352 |
T |
|
| Q |
309 |
taggaaacgtatcgaatggcaattattaatgaaaaaatggacctgatgatgaacttactaattcttcatctagttgagaagggtcccctgaaagtataga |
408 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |
|
|
| T |
28067351 |
aaggaaaccaatcgaatggcagttattaatgaaataatgggcctgatgatgaacttactaattcttcatcgatttgagaagggtcccctgaaagtataaa |
28067252 |
T |
|
| Q |
409 |
aaaggataattagtcctctctgagtac |
435 |
Q |
| |
|
|||| || ||||||||||||||||||| |
|
|
| T |
28067251 |
aaagaatcattagtcctctctgagtac |
28067225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 28152063 - 28152014
Alignment:
| Q |
371 |
tcttcatctagttgagaagggtcccctgaaagtatagaaaaggataatta |
420 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
28152063 |
tcttcatctatttgagaagggtcccctgaaagtataggaaagaataatta |
28152014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 30993749 - 30993708
Alignment:
| Q |
371 |
tcttcatctagttgagaagggtcccctgaaagtatagaaaag |
412 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30993749 |
tcttcatctatttgagaagggtcccctgaaagtatagaaaag |
30993708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 26127512 - 26127590
Alignment:
| Q |
15 |
ggaaaaagaagtcatgtcaatttggtcatcaagatcttcctacacagatttaaatcactaaatgata-tatcatatctt |
92 |
Q |
| |
|
|||||||||||||||| | |||||| |||| ||||||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
26127512 |
ggaaaaagaagtcatggctatttggctatcaccatcttcctacacagattcaaatcaacaaatgatattatcatatctt |
26127590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 26177562 - 26177640
Alignment:
| Q |
15 |
ggaaaaagaagtcatgtcaatttggtcatcaagatcttcctacacagatttaaatcactaaatgata-tatcatatctt |
92 |
Q |
| |
|
|||||||||||||||| | |||||| |||| ||||||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
26177562 |
ggaaaaagaagtcatggctatttggctatcaccatcttcctacacagattcaaatcaacaaatgatattatcatatctt |
26177640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 27920618 - 27920569
Alignment:
| Q |
371 |
tcttcatctagttgagaagggtcccctgaaagtatagaaaaggataatta |
420 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
27920618 |
tctttatctatttgagaagggtcccctgaaagtataggaaagaataatta |
27920569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 8538832 - 8538879
Alignment:
| Q |
371 |
tcttcatctagttgagaagggtcccctgaaagtatagaaaaggataat |
418 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
8538832 |
tcttcatctaattgagaagggtcccctgaaagcataggaaagaataat |
8538879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 11421638 - 11421589
Alignment:
| Q |
371 |
tcttcatctagttgagaagggtcccctgaaagtatagaaaaggataatta |
420 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
11421638 |
tcttcaactatttgagaagggtcccctgaaagtataggaaataataatta |
11421589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 27954583 - 27954546
Alignment:
| Q |
375 |
catctagttgagaagggtcccctgaaagtatagaaaag |
412 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27954583 |
catctatttgagaagggtcccctgaaagtataggaaag |
27954546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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