View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_25 (Length: 431)
Name: NF11400_low_25
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 25 - 413
Target Start/End: Complemental strand, 3544974 - 3544586
Alignment:
| Q |
25 |
gaacaagtacaacagaccgatttaaggagtttctgcagtttgatggcttgaggcaaagcgattaaccaaagcgagtgtgttgctggtaacttgagcaaca |
124 |
Q |
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| T |
3544974 |
gaacaagtacaacagaacgatttaaggagtttctgcagttcgatggcttgaggcaaagcgattaaccaaagcgagtgtgttgctggtaacttgagcaaca |
3544875 |
T |
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| Q |
125 |
ttgacaaccctgtccttgatggcagccttaacaattccattcatggaaggaccagcaaagccatcaagacaagtgttatcatcagtaagtgcagcactga |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544874 |
ttgacaaccctgtccttgatggcagccttaacaattccattcatggaaggaccagcaaagccatcaagacaagtgttatcatcagtaagtgcagcactga |
3544775 |
T |
|
| Q |
225 |
cccaagtctgcacgttggtcatgtgccacacaaagtcctctccaacagcatgaccaatactgcctaactccctaaccgattggctaagactgtccaaact |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544774 |
cccaagtctgcacgttggtcatgtgccacacaaagtcctctccaacagcatgaccaatactgcctaactccctaaccgattggctaagactgtccaaact |
3544675 |
T |
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| Q |
325 |
gtcacccatgttttctatgcagtcttgtacggctctgtactcccttggcttgatgcctcttgcttttgatatcttctttacaaatgatg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3544674 |
gtcacccatgttttctatgcagtcttgtacggctctgtactcccttggcttgatgcctcttgcttttgatatcttctttacaaacgatg |
3544586 |
T |
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