View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_26 (Length: 422)
Name: NF11400_low_26
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 4349771 - 4350176
Alignment:
| Q |
1 |
aacctcatgtttcatcaccaccacggtggctccacctcaagccgccgtaacgacacacgcctctctaccaaaagggagtatgagttcagctgtagcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4349771 |
aacctcatgtttcatcaccaccacggtggctccacctcaagccgtcgtaacgacacacgcctctctaccacaagggagtatgagttcagctgtagcaaca |
4349870 |
T |
|
| Q |
101 |
cccctaaatacaaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacgtgtgctcacgcgcctctcacacaagacgatgacattgttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4349871 |
cccctaaatacaaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacgtgtgctcacgcgcctctcacacaagacgatgacattgttac |
4349970 |
T |
|
| Q |
201 |
cgttaatgcggttaaggctgtgttagagaacatggtaaacaataatgaggtgataggtgaggcttccccggtgctccccggttctggacgaactcctatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4349971 |
cgttaatgcggttaaggctgtgttagagaaaatggtaaacaataatgaggtgataggtgaggcttccccggtgctccccggttctcgacgaactcctatg |
4350070 |
T |
|
| Q |
301 |
accaggcagttgatggttaatgaccttgacaccgatacggatgctgaggtagacaaggctgccgaagcatttataaagaggttttacttgcagttgaagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4350071 |
accaggcagttgatggttaatgaccttgacaccgatacggatgccgaggtagacaaggctgccgaagcatttataaagaggttttacttgcagttgaagt |
4350170 |
T |
|
| Q |
401 |
aagagg |
406 |
Q |
| |
|
|||||| |
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|
| T |
4350171 |
aagagg |
4350176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 4353157 - 4353395
Alignment:
| Q |
1 |
aacctcatgtttcatcaccaccacggtggctccacctcaagccgccgtaacgacacacgcctctctaccaaaagggagtatgagttcagctgtagcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
4353157 |
aacctcatgtttcatcaccaccatggtggctccacctcaagccgccgtaatgacacacgcctctctaccacaagggagtatgagttcagctgcagcaaca |
4353256 |
T |
|
| Q |
101 |
cccctaaatacaaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacgtgtgctcacgcgcctctcacacaagacgatgacattgttac |
200 |
Q |
| |
|
| || || ||||||||| | | |||||||| || | | |||||||||||||||||||||||||||||||| |||| || |||||||| || |
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|
| T |
4353257 |
cacccaactacaaatttgccctaaacaacaagcgtc---------ataacttcttcacgtgtgctcacgcgcctctcacaaaagaagacgacattgtaac |
4353347 |
T |
|
| Q |
201 |
cgttaatgcggttaaggctgtgttagagaacatggtaaacaataatga |
248 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||||||||||||||||| |
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|
| T |
4353348 |
cgttaatgcggttaaagctgtgttggagagcatggtaaacaataatga |
4353395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 4359113 - 4358875
Alignment:
| Q |
1 |
aacctcatgtttcatcaccaccacggtggctccacctcaagccgccgtaacgacacacgcctctctaccaaaagggagtatgagttcagctgtagcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
4359113 |
aacctcatgtttcatcaccaccatggtggctccacctcaagccgccgtaatgacacacgcctctctaccacaagggagtatgagttcagctgcagcaaca |
4359014 |
T |
|
| Q |
101 |
cccctaaatacaaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacgtgtgctcacgcgcctctcacacaagacgatgacattgttac |
200 |
Q |
| |
|
| || || ||||||||| | | |||||||| || | | |||||||||||||||||||||||||||||||| |||| || |||||||| || |
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|
| T |
4359013 |
cacccaactacaaatttgccctaaacaacaagcgtc---------ataacttcttcacgtgtgctcacgcgcctctcacaaaagaagacgacattgtaac |
4358923 |
T |
|
| Q |
201 |
cgttaatgcggttaaggctgtgttagagaacatggtaaacaataatga |
248 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||||||||||||||||| |
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|
| T |
4358922 |
cgttaatgcggttaaagctgtgttggagagcatggtaaacaataatga |
4358875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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