View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_28 (Length: 407)
Name: NF11400_low_28
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_28 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 19369361 - 19369737
Alignment:
| Q |
18 |
acagaggttgtggttctaagcttgttcaactcagatacaatcgagagataaagacaacaaagtttctacctaaaattaccatcagtacaatgattttgct |
117 |
Q |
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| T |
19369361 |
acagaggttgtggttctaagcttgttcaactcagatacaatcgagagataaagacaacaaagtttctacctaaaattaccatcagtacaatgattttgct |
19369460 |
T |
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| Q |
118 |
aaaatacaacaaattcaaggaacaccaataatgagctgggaaaattata----tagccaggagaatgcatagcagaactaaactattgcgtataacagga |
213 |
Q |
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| T |
19369461 |
aaaatacaacaaattcaaggaacaccaat--tgagctgggaaaattatatatatagccaggagaatgcatagcagaactaaactattgcgtataacagga |
19369558 |
T |
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| Q |
214 |
gttattaatgtttgtgacaagcatatatcactaaaagactccataaagacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaa |
313 |
Q |
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| T |
19369559 |
gttattaatgtttgtgacaagcatatatcactaaaagactccataaagacaaaactatagttcaagatgtagaattcaaagaaagatcaatgtttctaaa |
19369658 |
T |
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| Q |
314 |
gcatatatcataaaaagcaaaggataggttattgtacacaaacaaaca-ttctcaagattgagaatgaattcagaaagt |
391 |
Q |
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| T |
19369659 |
gcatatatcataaaaatcaaaggataggttattgtacacaaacaaacatttctcaagattgagaatgaattcagaaagt |
19369737 |
T |
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Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 383
Target Start/End: Original strand, 49856258 - 49856395
Alignment:
| Q |
244 |
ctaaaagactccataaagacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaagcatatatcataaaaagcaaaggataggtt |
343 |
Q |
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| T |
49856258 |
ctaaaagaccccataaagacaaaggtacagttccagatatagaatcgaaagaca--tcaacatttctaaagcatatatcatcaaaattaaaggataaatt |
49856355 |
T |
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| Q |
344 |
attgtacacaaacaaacattctcaagattgagaatgaatt |
383 |
Q |
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| T |
49856356 |
attgtacacaaacaaacagtctcaagattcagaatgaatt |
49856395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 1855 - 1912
Alignment:
| Q |
261 |
gacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaagcata |
318 |
Q |
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| T |
1855 |
gacaaatgtatagttccagatatataatttaaagaaagatcaatgtttttaaagcata |
1912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 3401 - 3458
Alignment:
| Q |
261 |
gacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttctaaagcata |
318 |
Q |
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| T |
3401 |
gacaaatgtatagttccagatatataatttaaagaaagatcaatgtttttaaagcata |
3458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 20130826 - 20130760
Alignment:
| Q |
244 |
ctaaaagactccataaagacaaaggtatagttcaagatgtataattcaaagaaagatcaatgtttct |
310 |
Q |
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|||||||||| | |||||||||||||||||||| |||| |||||||||| |||||||||||||| |
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| T |
20130826 |
ctaaaagacttcctaaagacaaaggtatagttccagataatgaattcaaagagagatcaatgtttct |
20130760 |
T |
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