View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_3 (Length: 913)
Name: NF11400_low_3
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 703; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 18 - 836
Target Start/End: Complemental strand, 504147 - 503327
Alignment:
| Q |
18 |
gactttatgtctctttgtactgtgaagtttggtgaatgatttgtctaaagctagatgtgttttagtgtcagannnnnnnn-aacaatgttttagtgtcag |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
504147 |
gactttatgtctctttgtactgtgaagtttggtgaatgatttgtctaaagttagatgtgttttagtgtcagatttttttttaacaatgttttagtgtcag |
504048 |
T |
|
| Q |
117 |
attactatataaacaacaatatcataactatcataatatgtaaatgaaaatgcttgtattaactttatccaaaaagaagatgtttgtataaatgtcgaaa |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
504047 |
attactatatcaacaacaatatcataactatcataatatgtaaatgaaaatgcttgtattaactt-atccaaaaagaagatgtttgtataaatgtcgaaa |
503949 |
T |
|
| Q |
217 |
tgttagattctttctgtggggacttgtgatcatagtgataatattccaacatttttagttgaatctcaatgtgaatgtatttcaa--ctgggactagttt |
314 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
503948 |
tgtaagattctttctgtggggacttgtgatcatagtgataatattccaacatttttagttgaatctcaatgtgaatgtatttcaaaactgggactagttt |
503849 |
T |
|
| Q |
315 |
agaagttaaatgtgatttaagtgatttagttcgtttctcaatgatagaattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagt |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
503848 |
agaagttaaatgtgatttaagtgatttagttcgtttctcaatgatagaattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagt |
503749 |
T |
|
| Q |
415 |
tgtttccgaatgttgccacgatagcaatctattaactatgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagacatgattggttttata |
514 |
Q |
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|
| T |
503748 |
tgtttctgaatgttgccacgatagtaatctattaactatgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagacatgattggttttata |
503649 |
T |
|
| Q |
515 |
tctaacacattgctttatgtttgaatgcttatttgcagaatggaaattttcaaaacaattgtagaggtggtcagaattatatgccattcaatgatttttg |
614 |
Q |
| |
|
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|
| T |
503648 |
tctaacacattgcttcatgtttgaatgcttatttgcagaatggaaattttcaaaacaattgtagaggtggtcagaattatatgccattcaatgatttttg |
503549 |
T |
|
| Q |
615 |
tcgggggcaatttaacttcaattaccaacaaagggtgacacaatatgctgataacatgcagttaccacatcatacgccgacagctatttttcataatagg |
714 |
Q |
| |
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| T |
503548 |
tcaggggcaatttaacttcaattaccaacaaagggtgatacaatatgctgataacatgcagttaccacatcaaacgtcgacagctatttttcataatagg |
503449 |
T |
|
| Q |
715 |
cagttaacacatcaaatgctggtgccatatgttggtaacatacagttaccaaataaaacgctctcaccctttactgataacaggcacttaccacatcaag |
814 |
Q |
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| T |
503448 |
caggtaacacatcaaatgccggtgccatatgttggtaacatacagttgccaaataaaacgctgtcaccctttactgataacaggcacttaccacatcaaa |
503349 |
T |
|
| Q |
815 |
cgctggcaccctatgcttataa |
836 |
Q |
| |
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|||||||||||||||| |||| |
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|
| T |
503348 |
tgctggcaccctatgctgataa |
503327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 2e-82; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 317 - 644
Target Start/End: Complemental strand, 11791687 - 11791360
Alignment:
| Q |
317 |
aagttaaatgtgatttaagtgatttagttcgtttctcaatgatagaattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttg |
416 |
Q |
| |
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|||||||||||| ||| |||||||||||| |||||| ||| ||||||||||||||| || | || ||||||| |||||| |||||||||||| || ||| |
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| T |
11791687 |
aagttaaatgtggtttgagtgatttagtttgtttctgaatcgtagaattattcaaatagtatagtatttgaaccttattgtaagaaagtcgagatatttg |
11791588 |
T |
|
| Q |
417 |
tttccgaatgttgccacgatagcaatctattaactatgtcatgaatcaatcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatc |
516 |
Q |
| |
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||| ||||||||||| |||||| |||||| ||| ||| || ||||| | ||| ||||| ||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
11791587 |
tttttgaatgttgccatgatagctatctatgcactgtgttataaatcacttgtttcaaacgtttaagttgttaggtgaaagacatgattggttttttatc |
11791488 |
T |
|
| Q |
517 |
taacacattgctttatgtttgaatgcttatttgcagaatggaaattttcaaaacaattgtagaggtggtcagaattatatgccattcaatgatttttgtc |
616 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||| |
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| T |
11791487 |
taactcattgcttcatgtttgaatgcttatttgcagaatggaaattttcaaaacaattatagaggtggttggaataatatgccattcaatgatttcagtc |
11791388 |
T |
|
| Q |
617 |
gggggcaatttaacttcaattaccaaca |
644 |
Q |
| |
|
|| || ||||||| |||||||||||| |
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|
| T |
11791387 |
aggaacagtttaactacaattaccaaca |
11791360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 363 - 642
Target Start/End: Complemental strand, 11783824 - 11783545
Alignment:
| Q |
363 |
attattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaatgttgccacgatagcaatctattaactatgtcatgaat |
462 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||| ||||| |||||||| |||| ||||||||| ||||| ||||||| ||| ||||||||| |
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| T |
11783824 |
attattcaaatggtttagtatttgaaccttattgcaacaaagt--aggtagttatttctgaatgttgcgtcgatataaatctatgcactttgtcatgaac |
11783727 |
T |
|
| Q |
463 |
caatcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatctaacac--attgctttatgtttgaatgcttatttgcagaatggaaa |
560 |
Q |
| |
|
|||| ||| || || |||||| |||| | |||| ||||||||| |||||| |||||| | ||||| |||||| |||| |||||||||||| |||| |
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| T |
11783726 |
caattgtttcgaatgcataagttgttagttaaaagttatgattggtattatatttaacactgactgcttcatgtttcaatgtgtatttgcagaatagaaa |
11783627 |
T |
|
| Q |
561 |
ttttcaaaacaattgtagaggtggtcagaattatatgccattcaatgatttttgtcgggggcaatttaacttcaattaccaa |
642 |
Q |
| |
|
|||||||||| ||| |||||||||| |||| ||||||||||| |||||||| || || | || || |||| |||||||||| |
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|
| T |
11783626 |
ttttcaaaactattatagaggtggttggaatgatatgccattcgatgattttagttggagacagttcaactacaattaccaa |
11783545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 366 - 585
Target Start/End: Original strand, 15438167 - 15438385
Alignment:
| Q |
366 |
attcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaatgttgccacgatagcaatctattaactatgtcatgaatcaa |
465 |
Q |
| |
|
|||| |||||||| ||| |||| | |||| |||||| |||||||| ||||||||| |||||||||| |||| | ||||||| | | ||||||||||||| |
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|
| T |
15438167 |
attctaatggtttcgtgcttgagccttatcgcaagagagtcgaggcagttgtttctgaatgttgccgtgatatcgatctattcattgtgtcatgaatcaa |
15438266 |
T |
|
| Q |
466 |
tcattttaaacgcttaagtttttaggtgaaagacatgattggttttatatctaacacattgctttatgtttgaatgcttatttgcagaatggaaattttc |
565 |
Q |
| |
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| ||| ||| ||||||||| ||| || |||||||| | ||||||||||||||||| | || || | |||||||||||||||||||| ||| |||||| |
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|
| T |
15438267 |
ttgtttcaaatgcttaagttgttaagtcaaagacat-aatggttttatatctaacatactgtttcgtatttgaatgcttatttgcagataggagattttc |
15438365 |
T |
|
| Q |
566 |
aaaacaattgtagaggtggt |
585 |
Q |
| |
|
||||||||| |||| ||||| |
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|
| T |
15438366 |
aaaacaattatagaagtggt |
15438385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 788 - 898
Target Start/End: Complemental strand, 11790712 - 11790602
Alignment:
| Q |
788 |
ctgataacaggcacttaccacatcaagcgctggcaccctatgcttataacatgcatttaccatatcaaacaccgataccctatgcttataacatgcactt |
887 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||| ||||||| |||||| | | || || |||||||||| |||||||||| |||||| || ||| |
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|
| T |
11790712 |
ctgataacaggtacttaccacatccagcgccggcacactatgctgataacaagtacttgacacatcaaacaccagcaccctatgctgataacaggccctt |
11790613 |
T |
|
| Q |
888 |
accacatcaaa |
898 |
Q |
| |
|
||||||||| |
|
|
| T |
11790612 |
ggcacatcaaa |
11790602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 11791880 - 11791835
Alignment:
| Q |
151 |
aatatgtaaatgaaaatgcttgtattaactttatccaaaaagaaga |
196 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||| |||| |
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|
| T |
11791880 |
aatatgtaaatgaagatgcttgtagtaactttatccaaaaaaaaga |
11791835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 9095567 - 9095630
Alignment:
| Q |
362 |
aattattcaaatggtttggtgtttgaacattattgcaagaaagtcgaggtagttgtttccgaat |
425 |
Q |
| |
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|||||||| |||||||| | |||||||| ||||||||||| ||| |||||||||| ||| |||| |
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|
| T |
9095567 |
aattattctaatggtttagagtttgaaccttattgcaagagagtagaggtagttgcttctgaat |
9095630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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