View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_low_32 (Length: 357)

Name: NF11400_low_32
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_low_32
NF11400_low_32
[»] chr2 (2 HSPs)
chr2 (146-342)||(22879645-22879841)
chr2 (1-70)||(22879500-22879569)
[»] chr4 (1 HSPs)
chr4 (167-231)||(47991611-47991675)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 146 - 342
Target Start/End: Original strand, 22879645 - 22879841
Alignment:
Q  146 ccccaactacatgtaccataatcacatttctgaggaggccaccaatccaaagttgcacaaataaaatcatcatcaatatttccaatcacagaactaccat 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879645 ccccaactacatgtaccataatcacatttctgaggaggccaccaatccaaagttgcacaaataaaatcatcatcaatatttccaatcacagaactaccat 22879744  T
Q  246 caatcacaacattccctttcttcacatcttcatcatatccactttcatcactcactgtgttcataacnnnnnnnctgaaccatgccaaatagtatat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||||||||||    
T  22879745 caatcacaacattccctttcttcacatcttcatcatatccactttcatcactcactgtgttcacaacaaaaaaactgaaccatgccaaatagtatat 22879841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22879500 - 22879569
Alignment:
Q  1 tgtccgtgtctgtgcttcatagatcgtaagaaaaccaagcaaacattctagaactcaccttgaagatttc 70  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22879500 tgtctgtgtctgtgcttcatagatcgtaagaaaaccaagcaaacattctagaactcaccttgaagatttc 22879569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 47991611 - 47991675
Alignment:
Q  167 tcacatttctgaggaggccaccaatccaaagttgcacaaataaaatcatcatcaatatttccaat 231  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||  |||||||    
T  47991611 tcacatttctgaggaggccaccaatcaagagttgcacaaacaaaatcattatcaatccttccaat 47991675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University