View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_33 (Length: 341)
Name: NF11400_low_33
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_33 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 139558 - 139246
Alignment:
| Q |
17 |
aatatgactctaaagaaagcagataaataaatttaccagaacacaatgattgattaccaagttcgaccaattgtacttacgtttcaacaaagtagctatt |
116 |
Q |
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| T |
139558 |
aatatgactctgaagaaagcagataaataaatgtaccagaacacagtgattgattaccaagttcgatcaattgtacttacgtttcaacaaagtagctatt |
139459 |
T |
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| Q |
117 |
gtagttctcttttaaataatattgaggtttaaagtacacatttttgtttaaatacgacagtccagattataagtttacccatgaaccgtattacaggagg |
216 |
Q |
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| T |
139458 |
atagttttcttttaaataatattgaggtttaaagtacacatttttgtttaaatactacggtccagattagaagtttacccatgaaccgtattacaggagg |
139359 |
T |
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| Q |
217 |
tttcgaccatgcaccacaaccttccaagtcataatttaacaaacgaattgggccaagcccaaatggtagggactctcgcttcgctgtgctcgttgcgctt |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
139358 |
tttcgaccatgcaccacaaccttcctagtcataatttaacaaacgaattgggccaagccc-aatggtagggactctcgcttcgctgtgctcgttgcgctt |
139260 |
T |
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| Q |
317 |
tcagctcttttctt |
330 |
Q |
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|||||||||||||| |
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| T |
139259 |
tcagctcttttctt |
139246 |
T |
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