View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_38 (Length: 316)
Name: NF11400_low_38
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 17669477 - 17669288
Alignment:
| Q |
18 |
agtagcatcatgtacatgtcacatccattactagatagcctcgcacatcatcacatgacattattcgaagaaatcaaaaacagacatatttgcaaattaa |
117 |
Q |
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| T |
17669477 |
agtagcatcatgtacatgtcacatccattactagatagcctcgcacatcatcacatgacattattcgaagaaatcaaaaccagacatatttgcaaattaa |
17669378 |
T |
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| Q |
118 |
aaagctgaattcgttacttttcaagtaaatatcattgcaacgaaaagttgaagtctcaatatgcttaaaacctagatcgcaatttgcact |
207 |
Q |
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| T |
17669377 |
aaagctgaattcattacttttcaagtaaatatcattgcaacgaaaagttgaagtctcaatatgcttaaaacctagatcgcaatttgcact |
17669288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 14674623 - 14674812
Alignment:
| Q |
18 |
agtagcatcatgtacatgtcacatccattactagatagcctcgcacatcatcacatgacattattcgaagaaatcaaaaacagacatatttgcaaattaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
14674623 |
agtagcatcatgtacatgtcacatccattactagatagcctcgcacatcatcaaatgacattattcgaagaaatcaaaaccagacgtatttgcaaattaa |
14674722 |
T |
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| Q |
118 |
aaagctgaattcgttacttttcaagtaaatatcattgcaacgaaaagttgaagtctcaatatgcttaaaacctagatcgcaatttgcact |
207 |
Q |
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| T |
14674723 |
aaagctgaattcattacttttcaagtaaatatcattgcaacgaaaagttgaagtctcaatatgcttaaaacctagatcgcaatttgcact |
14674812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 14674852 - 14674915
Alignment:
| Q |
247 |
accatattcttcttctattcaatcttgacaataatcctttcatgagtttccttgatgtccatct |
310 |
Q |
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| T |
14674852 |
accatattcttcttctattcaatcttgacaataatcctttcatgagtttccttgtcgtccatct |
14674915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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