View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_39 (Length: 316)
Name: NF11400_low_39
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 22879268 - 22879090
Alignment:
| Q |
1 |
attaagatgtaactatctacccattgtttgtagaaaacaagattataatttgcataccatataacaatgacagaacagaatattaactttgttgttcttt |
100 |
Q |
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| T |
22879268 |
attaagatgtcactatctacccattgtttgtagaaaacaagattataatttgcataccacataacaatgacagaacagaatattaactttgttgttcttt |
22879169 |
T |
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| Q |
101 |
tacttaattaatgataataatcctgttttctgcagggtttactgaaattatttattaattaattaacttcttggttgag |
179 |
Q |
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| T |
22879168 |
gacttaattaatgataataatcctgttttctgcagggtttgctgaaattatttattaattaattaacttcttggttgag |
22879090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 22879037 - 22878977
Alignment:
| Q |
232 |
cacttcatgtcacacttcaaaatcttggtacattttttctaaggtagaatttgtaaaattaca |
294 |
Q |
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| T |
22879037 |
cacttcatgtcacacttcaaaatctt-gtacattttttc-aaggtagaatttgtaaaattaca |
22878977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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