View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_4 (Length: 813)
Name: NF11400_low_4
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 331 - 796
Target Start/End: Complemental strand, 40174755 - 40174284
Alignment:
| Q |
331 |
ctcttattactagactatcctccatttgatttacccttttaaccggtgagaaaatatttttaatattaatccaaatgattaaggcagtataatacatttc |
430 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
40174755 |
ctctaattactagactatcctccatttgatttacccttttaaccggtgagaaaatatttttaatattaatccaaataattaaggcaatataatacatttc |
40174656 |
T |
|
| Q |
431 |
cgtcaattctcaatatgattatcacttaatcaactatttgtttaaaacaaattattggaatccatattgagggaactccaaaactgatgaacgagatgca |
530 |
Q |
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| T |
40174655 |
cgtcaattctcaatatgattatcacttaatcaactatttgtttaaaacaaattattggaatccatattgagggaactccaaaactgatgaacgagatgca |
40174556 |
T |
|
| Q |
531 |
caaaaatgcttagaactaaggattgtgattgaagactg----ct--ttttagtcactcaattttactacactcgtaaacaagagaacaagagccgggtat |
624 |
Q |
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| T |
40174555 |
caaaaatgcttagaactaaggattgtgattgtagagtgtagactgcttttagtcacccaattttactacactcgtaaacaagagagaaagagccgggtat |
40174456 |
T |
|
| Q |
625 |
tctcaccttatgctgactgtatttctctctgatagcagtaatggaaggtgaactatgatagccattgtggtacaacaaatgcaatccctcaacacattcc |
724 |
Q |
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| T |
40174455 |
tctcaccttatgctgactgtatttctctctgatagcagtaatggaaggtgaactatgatagccatttcggtacaacaaatgcaatccctcaacacattcc |
40174356 |
T |
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| Q |
725 |
tgcaattctgatgcttggtaacctgtgtaatgccttagcatagagttctatacaaaagcatatgcatagttg |
796 |
Q |
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| T |
40174355 |
cgcaattctgatgcttggtaacctgtgtaatgccttagcatagagttctataccaaagcatatgcatagttg |
40174284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 338
Target Start/End: Original strand, 40174770 - 40175107
Alignment:
| Q |
4 |
ctatctaagtatatctatgtatagagtatagatatgattcatgataaaaa---tcatagttcaatacatgtgagagttgagggtgggaa-ctgttcagtt |
99 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
40174770 |
ctatctaagaatatctatgtatagagtatagatatgattcatgataaaaaaaatcacagttcaa-acatgtgagagttgagggtgggaaactgttcagtt |
40174868 |
T |
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| Q |
100 |
aacaatnnnnnnnnggttttgattgttgcgttattaatttggattctgtaggattcgtaatgccggtaac-aacttcatgtaattaaggtcgcaatgcat |
198 |
Q |
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| T |
40174869 |
aacaa-aaaaaaaaggttttgactgttgcattattaatttggattttgtaggattcgtaatgccggtaactaacttcatgtaattaaggttgcaatgcat |
40174967 |
T |
|
| Q |
199 |
gcaaattagtggggtatcaggggctagattgaagggtgtaaaggggttgtccatttagaattctagtcatctattagactattaatttgcacacgccatc |
298 |
Q |
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| T |
40174968 |
gcaaattagtggggtatcagggactagattgaagggtgtaaaggggttgtccatttagaattgcagtcatctattaggctattaatttgcacacgcaatc |
40175067 |
T |
|
| Q |
299 |
tatttatggctacatatggcttgaatatctggctcttatt |
338 |
Q |
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| T |
40175068 |
tatttatggctacatatggcttgaatatctggctcttatt |
40175107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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