View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11400_low_41 (Length: 304)
Name: NF11400_low_41
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 32609577 - 32609305
Alignment:
| Q |
15 |
aagaacaataataaaacaataacactaactaaaaaatttgacagttgctgatttcacacccatcgtttcttataaaaacatgaaaatgactnnnnnnnnt |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
32609577 |
aagaacaataataaaacaataac--taactaaaaaatttgacagttgctgatttcacacccattgtttcttataaaaatatggaaatgactaaaaaac-- |
32609482 |
T |
|
| Q |
115 |
ttagcggtagttaattatagtcgatttttctagttataagtc---ggtaattaactatcactaaggtgtttttggttatttccatgtgtttctagaaaat |
211 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32609481 |
ttaacggtagttaactatagtcgatttttctagttataagtcagcggtaattaattatcactgaagtgtttttgattatttccatgtgtttctagaaaat |
32609382 |
T |
|
| Q |
212 |
gatg-atgtggagataagcaattgccaaaaatcctagtcaaaatataaggactagcgaccgtgttagcaacgttatg |
287 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
32609381 |
gatggatgtggagataagcaattgccaaaaatcctagtcaaaacataaggactagcgactgtgttagcaacgttatg |
32609305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 22555361 - 22555297
Alignment:
| Q |
140 |
ttttctagttataagtc---ggtaattaactatcactaaggtgtttttggttatttccatgtgtt |
201 |
Q |
| |
|
|||||||||||||| || |||| ||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
22555361 |
ttttctagttataaatcaacggtagttaactatcgttaaggtgtttttggttatgtccatgtgtt |
22555297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 21538890 - 21538860
Alignment:
| Q |
180 |
tttttggttatttccatgtgtttctagaaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21538890 |
tttttggttatttccatgtgtttctagaaaa |
21538860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 4873136 - 4873062
Alignment:
| Q |
140 |
ttttctagttataagtc---ggtaattaactatcactaaggtgtttttggttatttccatgtgtttctagaaaat |
211 |
Q |
| |
|
||||||||||||||||| |||| ||||||| | || | ||||||||| | |||||||||||||| |||||||| |
|
|
| T |
4873136 |
ttttctagttataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaat |
4873062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 49632894 - 49632966
Alignment:
| Q |
140 |
ttttctagttataagtc---ggtaattaactatcactaaggtgtttttggttatttccatgtgtttctagaaa |
209 |
Q |
| |
|
|||||||||||||| || |||| ||||||| ||| | | |||||||||| ||||||||||||||||||||| |
|
|
| T |
49632894 |
ttttctagttataaatcagcggtagttaactaccacgaggatgtttttggtcatttccatgtgtttctagaaa |
49632966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University