View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_low_42 (Length: 294)

Name: NF11400_low_42
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_low_42
NF11400_low_42
[»] chr6 (2 HSPs)
chr6 (161-243)||(33903206-33903286)
chr6 (240-277)||(3987063-3987100)
[»] chr4 (3 HSPs)
chr4 (173-243)||(31035312-31035381)
chr4 (240-277)||(28093254-28093291)
chr4 (237-277)||(49243808-49243848)
[»] chr8 (2 HSPs)
chr8 (243-288)||(31318804-31318849)
chr8 (241-288)||(10203661-10203708)
[»] scaffold0062 (1 HSPs)
scaffold0062 (244-277)||(6718-6751)
[»] scaffold0043 (1 HSPs)
scaffold0043 (244-277)||(87321-87354)
[»] chr2 (1 HSPs)
chr2 (241-277)||(16089819-16089855)
[»] chr1 (1 HSPs)
chr1 (244-288)||(2509024-2509068)


Alignment Details
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 33903286 - 33903206
Alignment:
Q  161 atcgcaagaaatattctcacgaaggcttcacgacatacacccatgccctccgttttttccacccagtccaagattaaaataaa 243  Q
    |||||| |||||||||||| | ||||||||| ||||||||| |||||  ||||||||||||||||||| ||||||||||||||    
T  33903286 atcgcaggaaatattctcatggaggcttcacaacatacacc-atgcca-ccgttttttccacccagtcgaagattaaaataaa 33903206  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 3987100 - 3987063
Alignment:
Q  240 taaagagttcttatacatgaaccaccttatgtggcata 277  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  3987100 taaagagctcttatacatgaaccaccttaggtggcata 3987063  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 31035312 - 31035381
Alignment:
Q  173 attctcacgaaggcttcacgacatacacccatgccctccgttttttccacccagtccaagattaaaataaa 243  Q
    ||||||| |||| |||||||||||||||| |||||| |||||||||||| ||| ||||| |||| ||||||    
T  31035312 attctcatgaagccttcacgacatacacc-atgcccaccgttttttccagccaatccaatattagaataaa 31035381  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 28093291 - 28093254
Alignment:
Q  240 taaagagttcttatacatgaaccaccttatgtggcata 277  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  28093291 taaagagctcttatacatgaaccaccttaggtggcata 28093254  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 49243808 - 49243848
Alignment:
Q  237 aaataaagagttcttatacatgaaccaccttatgtggcata 277  Q
    |||||| ||| ||||||||||||||||||||| ||||||||    
T  49243808 aaataatgagctcttatacatgaaccaccttaggtggcata 49243848  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 31318804 - 31318849
Alignment:
Q  243 agagttcttatacatgaaccaccttatgtggcatatatctttttac 288  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||    
T  31318804 agagctcttatacatgaaccaccttaggtggcatataactttttac 31318849  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 10203661 - 10203708
Alignment:
Q  241 aaagagttcttatacatgaaccaccttatgtggcatatatctttttac 288  Q
    |||||||||||||||||||||||||||| ||| |||| ||| ||||||    
T  10203661 aaagagttcttatacatgaaccaccttaggtgacatacatccttttac 10203708  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 6718 - 6751
Alignment:
Q  244 gagttcttatacatgaaccaccttatgtggcata 277  Q
    ||||||||||||||||||||||||| ||||||||    
T  6718 gagttcttatacatgaaccaccttaggtggcata 6751  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 87354 - 87321
Alignment:
Q  244 gagttcttatacatgaaccaccttatgtggcata 277  Q
    ||||||||||||||||||||||||| ||||||||    
T  87354 gagttcttatacatgaaccaccttaggtggcata 87321  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 16089819 - 16089855
Alignment:
Q  241 aaagagttcttatacatgaaccaccttatgtggcata 277  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  16089819 aaagagctcttatacatgaaccaccttaagtggcata 16089855  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 2509024 - 2509068
Alignment:
Q  244 gagttcttatacatgaaccaccttatgtggcatatatctttttac 288  Q
    ||||||||||||||||||||||||| ||| |||| ||| ||||||    
T  2509024 gagttcttatacatgaaccaccttaggtgacatacatccttttac 2509068  T

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