View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_low_49 (Length: 252)

Name: NF11400_low_49
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_low_49
NF11400_low_49
[»] chr3 (6 HSPs)
chr3 (1-93)||(49639703-49639795)
chr3 (163-242)||(49639554-49639633)
chr3 (8-66)||(6008988-6009046)
chr3 (8-48)||(17783961-17784001)
chr3 (8-48)||(19085480-19085520)
chr3 (8-48)||(19092588-19092628)
[»] chr7 (1 HSPs)
chr7 (1-69)||(17245416-17245484)
[»] chr2 (1 HSPs)
chr2 (12-66)||(23378401-23378455)
[»] chr8 (2 HSPs)
chr8 (8-66)||(14502850-14502908)
chr8 (8-66)||(15993372-15993430)
[»] chr5 (1 HSPs)
chr5 (8-66)||(22289505-22289563)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 49639795 - 49639703
Alignment:
Q  1 caagccttgctcattagtaactttattaccgacatcatcatcaagagaaataacgcgatttacctttttcaagttgtagcagaggctgtgatt 93  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49639795 caagccttgctcattagtaactttattaccgacatcattatcaagagaaataacgcgatttacctttttcaagttgtagcaggggctgtgatt 49639703  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 49639633 - 49639554
Alignment:
Q  163 ggtctcttgattaatttacaggttatgttttgacccctaagtaataaatattacgttttaatcccataattccatctctg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49639633 ggtctcttgattaatttacaggttatgttttgacccctaagtaataaatattacgttttaatcccataattccatctctg 49639554  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 6008988 - 6009046
Alignment:
Q  8 tgctcattagtaactttattaccgacatcatcatcaagagaaataacgcgatttacctt 66  Q
    ||||||||||||| |||||||||  ||||||||||||||||| | |  |||||||||||    
T  6008988 tgctcattagtaattttattacccgcatcatcatcaagagaagttatacgatttacctt 6009046  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 17784001 - 17783961
Alignment:
Q  8 tgctcattagtaactttattaccgacatcatcatcaagaga 48  Q
    ||||||||||||| |||||||||  ||||||||||||||||    
T  17784001 tgctcattagtaattttattacctgcatcatcatcaagaga 17783961  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 19085520 - 19085480
Alignment:
Q  8 tgctcattagtaactttattaccgacatcatcatcaagaga 48  Q
    ||||||||||||| |||||||||  ||||||||||||||||    
T  19085520 tgctcattagtaattttattacctgcatcatcatcaagaga 19085480  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 19092628 - 19092588
Alignment:
Q  8 tgctcattagtaactttattaccgacatcatcatcaagaga 48  Q
    ||||||||||||| |||||||||  ||||||||||||||||    
T  19092628 tgctcattagtaattttattacctgcatcatcatcaagaga 19092588  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17245416 - 17245484
Alignment:
Q  1 caagccttgctcattagtaactttattaccgacatcatcatcaagagaaataacgcgatttaccttttt 69  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  17245416 caagccttgctcattagtaactttattaccgacatcatcgtcaagagaaataatgcgatttaccttttt 17245484  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 23378455 - 23378401
Alignment:
Q  12 cattagtaactttattaccgacatcatcatcaagagaaataacgcgatttacctt 66  Q
    ||||||| | ||||||||| |||||||| ||||||||||||| ||||||||||||    
T  23378455 cattagtgattttattacctacatcatcgtcaagagaaataatgcgatttacctt 23378401  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 14502908 - 14502850
Alignment:
Q  8 tgctcattagtaactttattaccgacatcatcatcaagagaaataacgcgatttacctt 66  Q
    ||||||||||||| |||||||||  ||||||||||||||||| | |  |||||||||||    
T  14502908 tgctcattagtaattttattacccgcatcatcatcaagagaagttatacgatttacctt 14502850  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 15993372 - 15993430
Alignment:
Q  8 tgctcattagtaactttattaccgacatcatcatcaagagaaataacgcgatttacctt 66  Q
    ||||||||||||| |||||||||  ||||||||||||||||| | |  |||||||||||    
T  15993372 tgctcattagtaattttattacccgcatcatcatcaagagaagttatacgatttacctt 15993430  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 22289563 - 22289505
Alignment:
Q  8 tgctcattagtaactttattaccgacatcatcatcaagagaaataacgcgatttacctt 66  Q
    ||||||||||||| |||||||||  ||||||||||||||||| | |  |||||||||||    
T  22289563 tgctcattagtaattttattacccgcatcatcatcaagagaagttatacgatttacctt 22289505  T

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