View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_50 (Length: 248)
Name: NF11400_low_50
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 33901704 - 33901483
Alignment:
| Q |
19 |
gttacattctagattgatgattaatttgagtgattaatttatatattataggtaactatggggcccaaggaatgatagacttcatgaatgagagcaagtt |
118 |
Q |
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| T |
33901704 |
gttacattctagattgatgattaatttgagtgattaatttatatattataggtaactatggggcccaaggaatgatagacttcatgaatgagagcaagtt |
33901605 |
T |
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| Q |
119 |
gatggatcttcttaacagctctgagtatgtgccaacctatgaagataaggatggcgactggatgctcgtgggagatgtcccatgggagtaagttcctata |
218 |
Q |
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| T |
33901604 |
gatggatcttcttaacagctctgagtatgtgccaacctatgaagataaggatggcgactggatgctcgtgggagatgtcccatgggagtaagttcctata |
33901505 |
T |
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| Q |
219 |
tacctcatccaaccttcatctc |
240 |
Q |
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| T |
33901504 |
tacctcatccaacctccatctc |
33901483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 31338503 - 31338405
Alignment:
| Q |
114 |
aagttgatggatcttcttaacagctctgagtatgtgccaacctatgaagataaggatggcgactggatgctcgtgggagatgtcccatgggagtaagtt |
212 |
Q |
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| T |
31338503 |
aagttgatggatctattgaacagctccgactatgtcccaacttatgaagacaaagatggcgactggatgcttgtcggtgatgtaccatgggagtaagtt |
31338405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 15064582 - 15064645
Alignment:
| Q |
150 |
ccaacctatgaagataaggatggcgactggatgctcgtgggagatgtcccatgggagtaagttc |
213 |
Q |
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| T |
15064582 |
ccaacctatgaagacaaggatggtgactggatgctagttggagatgttccatgggagtaagttc |
15064645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 35974684 - 35974572
Alignment:
| Q |
95 |
agacttcatgaatgagagcaagttgatggatcttcttaacagctctgagtatgtgccaacctatgaagataaggatggcgactggatgctcgtgggagat |
194 |
Q |
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| T |
35974684 |
agacttcatgaatgaaagcaaattgattgaccttttgaacggttctgattatgtaccaacatatgaagacaaagatggtgattggatgcttgttggtgat |
35974585 |
T |
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| Q |
195 |
gtcccatgggagt |
207 |
Q |
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| T |
35974584 |
gttccttgggagt |
35974572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 38529522 - 38529649
Alignment:
| Q |
84 |
caaggaatgatagacttcatgaatgagagcaagttgatggatcttcttaacagctctgagtatgtgccaacctatgaagataaggatggcgactggatgc |
183 |
Q |
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| T |
38529522 |
caaggaatgaaggatttcatgaatgagagtaagttgatggatcttttaaacaattctgattatgttccaacctatgaagacaaggatggtgactggatgc |
38529621 |
T |
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| Q |
184 |
tcgtgggagatgtcccatgggagtaagt |
211 |
Q |
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| T |
38529622 |
ttgtcggtgacgtcccatgggagtaagt |
38529649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 28201711 - 28201655
Alignment:
| Q |
156 |
tatgaagataaggatggcgactggatgctcgtgggagatgtcccatgggagtaagtt |
212 |
Q |
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| T |
28201711 |
tatgaagataaagatggtgactggatgcttgtaggagatgtaccatgggagtaagtt |
28201655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 43392168 - 43392104
Alignment:
| Q |
144 |
tatgtgccaacctatgaagataaggatggcgactggatgctcgtgggagatgtcccatgggagta |
208 |
Q |
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| T |
43392168 |
tatgtgcttacctatgaagacaaggatggtgattggatgctagttggtgatgttccatgggagta |
43392104 |
T |
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