View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_low_53 (Length: 243)

Name: NF11400_low_53
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_low_53
NF11400_low_53
[»] chr3 (6 HSPs)
chr3 (1-227)||(49639832-49640058)
chr3 (64-203)||(8563290-8563429)
chr3 (115-218)||(6008727-6008830)
chr3 (109-212)||(17784153-17784256)
chr3 (109-212)||(19085672-19085775)
chr3 (109-212)||(19092780-19092883)
[»] chr8 (3 HSPs)
chr8 (1-227)||(29338577-29338803)
chr8 (109-218)||(14503060-14503169)
chr8 (166-218)||(15993111-15993163)
[»] chr7 (4 HSPs)
chr7 (1-227)||(17245162-17245379)
chr7 (88-203)||(4646793-4646908)
chr7 (91-217)||(3207705-3207831)
chr7 (88-203)||(41598348-41598463)
[»] scaffold0252 (1 HSPs)
scaffold0252 (88-203)||(5220-5335)
[»] chr5 (2 HSPs)
chr5 (109-218)||(22289715-22289824)
chr5 (109-194)||(28243990-28244075)
[»] chr4 (3 HSPs)
chr4 (109-218)||(30856701-30856810)
chr4 (146-186)||(17455361-17455401)
chr4 (124-204)||(6613973-6614053)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 49639832 - 49640058
Alignment:
Q  1 caaaagcaaactggcgactttgcctctgttataaatgttattaattctgctatttccgactcggataatgacatgcttactgctccgtttaccaaggccg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49639832 caaaagcaaactggtgactttgcctctgttataaatgttattaattctgctatttccgactcggataatgacatgcttactgctccgtttaccaaggtcg 49639931  T
Q  101 aattctgtgatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcga 200  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||    
T  49639932 aattccgtgatgcaattttctctatgcatccggacaagtgctccagtcctgatggctataatccgggtttttatcagcacttttgaaatttatgcagcga 49640031  T
Q  201 tgatgtttttaaggaatggtgtacttg 227  Q
     |||||||||||| |||||||| ||||    
T  49640032 cgatgtttttaagaaatggtgtgcttg 49640058  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 203
Target Start/End: Original strand, 8563290 - 8563429
Alignment:
Q  64 gataatgacatgcttactgctccgtttaccaaggccgaattctgtgatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatc 163  Q
    ||||||||| | ||||| || || || || |||||||||||  ||| ||| ||||||| ||||||||||||||| || ||| | |||||||| |||| ||    
T  8563290 gataatgaccttcttacggcacctttcactaaggccgaatttcgtgttgctattttctctatgcatccggacaaatgttccggccctgatggttatagtc 8563389  T
Q  164 caggtttttatcagcacttctggaatttatgcagcgatga 203  Q
    | |||||||| || || || ||| ||||||||||||||||    
T  8563390 cgggtttttaccaacatttttggcatttatgcagcgatga 8563429  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 6008830 - 6008727
Alignment:
Q  115 attttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcgatgatgtttttaagg 214  Q
    ||||||| ||||||||| || ||||| ||  | || |||||||  ||||| |||||||| |||||||| ||||||||||| || |||||| ||||||| |    
T  6008830 attttctctatgcatccagataagtgttcaggcccagatggcttcaatccgggtttttaccagcacttttggaatttatgtagtgatgatatttttaaag 6008731  T
Q  215 aatg 218  Q
    ||||    
T  6008730 aatg 6008727  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 17784153 - 17784256
Alignment:
Q  109 gatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcgatgatgttt 208  Q
    ||||| ||||||| ||||||||| || ||||| ||  | || |||||||  ||||| ||||||||||||||||| |||| |||||| || |||||| |||    
T  17784153 gatgctattttctctatgcatccagataagtgttcaggcccagatggcttcaatccgggtttttatcagcacttttggagtttatgtagtgatgatattt 17784252  T
Q  209 ttaa 212  Q
    ||||    
T  17784253 ttaa 17784256  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 19085672 - 19085775
Alignment:
Q  109 gatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcgatgatgttt 208  Q
    ||||| ||||||| ||||||||| || ||||| ||  | || |||||||  ||||| ||||||||||||||||| |||| |||||| || |||||| |||    
T  19085672 gatgctattttctctatgcatccagataagtgttcaggcccagatggcttcaatccgggtttttatcagcacttttggagtttatgtagtgatgatattt 19085771  T
Q  209 ttaa 212  Q
    ||||    
T  19085772 ttaa 19085775  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 19092780 - 19092883
Alignment:
Q  109 gatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcgatgatgttt 208  Q
    ||||| ||||||| ||||||||| || ||||| ||  | || |||||||  ||||| ||||||||||||||||| |||| |||||| || |||||| |||    
T  19092780 gatgctattttctctatgcatccagataagtgttcaggcccagatggcttcaatccgggtttttatcagcacttttggagtttatgtagtgatgatattt 19092879  T
Q  209 ttaa 212  Q
    ||||    
T  19092880 ttaa 19092883  T

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Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29338803 - 29338577
Alignment:
Q  1 caaaagcaaactggcgactttgcctctgttataaatgttattaattctgctatttccgactcggataatgacatgcttactgctccgtttaccaaggccg 100  Q
    ||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29338803 caaaaccaaaccgacgactttgcctctgttattaatgttattaattctgctatttccgactcggataatgacatgcttactgctccatttaccaaggccg 29338704  T
Q  101 aattctgtgatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcga 200  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  29338703 aattccgtgatgcaattttctctatgcattcggacaagtgctccagtcctgatggctatagtccgggtttttatcagcacttttggaatttatgcagcga 29338604  T
Q  201 tgatgtttttaaggaatggtgtacttg 227  Q
     ||||||||||||||||| ||| ||||    
T  29338603 cgatgtttttaaggaatgttgtgcttg 29338577  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 14503060 - 14503169
Alignment:
Q  109 gatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcgatgatgttt 208  Q
    ||||| ||||||| ||||||||| || ||||| ||  | || |||||||  ||||| |||||||| |||||||| ||||||||||| || |||||| |||    
T  14503060 gatgctattttctctatgcatccagataagtgttcaggcccagatggcttcaatccgggtttttaccagcacttttggaatttatgtagtgatgatattt 14503159  T
Q  209 ttaaggaatg 218  Q
    |||| |||||    
T  14503160 ttaaagaatg 14503169  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 15993163 - 15993111
Alignment:
Q  166 ggtttttatcagcacttctggaatttatgcagcgatgatgtttttaaggaatg 218  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||||| |||||    
T  15993163 ggtttttaccagcacttttggaatttatgtagtgatgatatttttaaagaatg 15993111  T

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Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 17245379 - 17245162
Alignment:
Q  1 caaaagcaaactggcgactttgcctctgttataaatgttattaattctgctatttccgactcggataatgacatgcttactgctccgtttaccaaggccg 100  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  17245379 caaaagcaaactggcgactttgcctctgttat---------taattctgctatttccgactcggataatgacatgcttactactccatttaccaaggccg 17245289  T
Q  101 aattctgtgatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcga 200  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  17245288 aattccgtgatgcaattttctctatgcatccggacaagtgctccggtcctgatggctataatccgggtttttatcagcacttttggaatttatgcagcga 17245189  T
Q  201 tgatgtttttaaggaatggtgtacttg 227  Q
     ||||||||||||||||| ||| ||||    
T  17245188 cgatgtttttaaggaatgttgtgcttg 17245162  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 4646908 - 4646793
Alignment:
Q  88 tttaccaaggccgaattctgtgatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctgga 187  Q
    ||||| |||||||| ||  | ||||| ||||||| ||||||||||||||||| |||| | ||||||||||||| ||| |||||||| ||  |||| ||||    
T  4646908 tttactaaggccgagtttcgagatgctattttctctatgcatccggacaagtactccggccctgatggctatagtccgggtttttaccaatacttttgga 4646809  T
Q  188 atttatgcagcgatga 203  Q
    |||||||||| |||||    
T  4646808 atttatgcagtgatga 4646793  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 3207831 - 3207705
Alignment:
Q  91 accaaggccgaattctgtgatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatt 190  Q
    ||||||||||||||    ||||||||||||| |||||||||||| ||||| |   |||||||||| || |||||  ||||||| || || || |||||||    
T  3207831 accaaggccgaatttaaggatgcaattttctctatgcatccggagaagtgtttaggtcctgatgggtacaatccgagtttttaccaacatttttggaatt 3207732  T
Q  191 tatgcagcgatgatgtttttaaggaat 217  Q
    |||| || |||||| ||||||| ||||    
T  3207731 tatgtagtgatgatatttttaatgaat 3207705  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 41598348 - 41598463
Alignment:
Q  88 tttaccaaggccgaattctgtgatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctgga 187  Q
    ||||| |||||||| ||  ||| ||| ||||||| ||| || ||||| || |||||| | |||||||| |||| ||| |||||||| || || || ||||    
T  41598348 tttactaaggccgagtttcgtgttgctattttctctatacacccggataaatgctccggccctgatggatatagtccgggtttttaccaacaattttgga 41598447  T
Q  188 atttatgcagcgatga 203  Q
    ||||||||||||||||    
T  41598448 atttatgcagcgatga 41598463  T

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Target: scaffold0252 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 5220 - 5335
Alignment:
Q  88 tttaccaaggccgaattctgtgatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctgga 187  Q
    ||||| |||||||||||  ||| ||| ||||||| ||||||||||||||| || ||| | |||||||| |||| ||| |||||||| || || || ||||    
T  5220 tttactaaggccgaatttcgtgttgctattttctctatgcatccggacaaatgttccggccctgatggatatagtccgggtttttaccaacaattttgga 5319  T
Q  188 atttatgcagcgatga 203  Q
    |||||||||| |||||    
T  5320 atttatgcagtgatga 5335  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 22289715 - 22289824
Alignment:
Q  109 gatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcgatgatgttt 208  Q
    ||||| ||||||| ||||||||| || ||||| ||  | || |||||||  ||||| |||||||| |||||||| ||||||||||| || |||||| |||    
T  22289715 gatgctattttctctatgcatccagataagtgttcaggcccagatggcttcaatccgggtttttaccagcacttttggaatttatgtagtgatgatattt 22289814  T
Q  209 ttaaggaatg 218  Q
    |||| |||||    
T  22289815 ttaaagaatg 22289824  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 28243990 - 28244075
Alignment:
Q  109 gatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatg 194  Q
    ||||| ||||||| ||||||||| |||||||| ||  | ||||||||||  ||||| | |||||| |||||||| |||||||||||    
T  28243990 gatgctattttctctatgcatccagacaagtgttcaggccctgatggcttcaatccggatttttaccagcacttatggaatttatg 28244075  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 30856701 - 30856810
Alignment:
Q  109 gatgcaattttctttatgcatccggacaagtgctccagtcctgatggctataatccaggtttttatcagcacttctggaatttatgcagcgatgatgttt 208  Q
    ||||| ||||||| ||||||||| || ||||| ||  || | |||||||  ||| | |||||||| |||||||| ||||||||||| || |||||| |||    
T  30856701 gatgctattttctctatgcatccagataagtgttcaggttcagatggcttcaattcgggtttttaccagcacttttggaatttatgtagtgatgatattt 30856800  T
Q  209 ttaaggaatg 218  Q
    |||| |||||    
T  30856801 ttaaagaatg 30856810  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 17455361 - 17455401
Alignment:
Q  146 gtcctgatggctataatccaggtttttatcagcacttctgg 186  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  17455361 gtcctgatggctttaatccaggtttttatcaacacttctgg 17455401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 6613973 - 6614053
Alignment:
Q  124 atgcatccggacaagtgctccagtcct-gatggctataatccaggtttttatcagcacttctggaatttatgcagcgatgat 204  Q
    |||||||||||||||||| |||| ||| || ||||||| ||| || ||||||||||| ||||||| | ||||||| ||||||    
T  6613973 atgcatccggacaagtgc-ccaggccttgacggctatagtccgggattttatcagcatttctggagtctatgcagtgatgat 6614053  T

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