View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_55 (Length: 241)
Name: NF11400_low_55
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 41467899 - 41468103
Alignment:
| Q |
18 |
catagggcaagaggaannnnnnncctagctaactaacaatgcacgatcaagatgatgataaaagacaaaatgaagctacgtataggcttagtagtaagaa |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41467899 |
catagggcaagaggaatttttttcctagctaactaacaatgcacgatcaagatgatgataaaagacaaaatgaagctacgtataggcttagtagtaagaa |
41467998 |
T |
|
| Q |
118 |
ctaagaagtagggtcacgaacttgnnnnnnngaacggttttgaataacaatgtcgtacatatgaaagtgcttaaaactactgaagtttcttgggagtgat |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41467999 |
ctaagaagtagggtcacgaacttgaaaaaaagaacggttttgaataacaatgtcgtacatatgaaagtgcttaaaactattgaagtttcttgggagtgat |
41468098 |
T |
|
| Q |
218 |
agaag |
222 |
Q |
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||||| |
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| T |
41468099 |
agaag |
41468103 |
T |
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