View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_56 (Length: 240)
Name: NF11400_low_56
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_56 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 44178660 - 44178438
Alignment:
| Q |
18 |
aggttgttgatcaattcaaaattataaagatgtgtcttttatgtattgtttaattacattttcttgtttttggttctttgatattgatccaatctatgtt |
117 |
Q |
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| T |
44178660 |
aggttgttgatcaattcaaaattataaagatgtgtcttttatgtattgtttaattacattttcttgtttttggttctttgatattgatccaatctatgtt |
44178561 |
T |
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| Q |
118 |
tacatttactaatgtagtaagtaatgtacactacttttcttgattcctttcatttggctcataaatggctattgtattgcagaattctcacatcaagatt |
217 |
Q |
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| T |
44178560 |
tacatttactaatgtagtaagtaatgtacactacttttcttgattcctttcatttggctcataactggctattttattgcagaattctcacatcaagatt |
44178461 |
T |
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| Q |
218 |
tagtatccattgcttctggatct |
240 |
Q |
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| T |
44178460 |
ttgtatccattgcttctggatct |
44178438 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 14801058 - 14801109
Alignment:
| Q |
78 |
ttcttgtttttggttctttgatattgatccaatctatgtttacatttactaa |
129 |
Q |
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| T |
14801058 |
ttcttgtttttgtttccttgatatccattcaatctatgtttacatttactaa |
14801109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 15248050 - 15248101
Alignment:
| Q |
78 |
ttcttgtttttggttctttgatattgatccaatctatgtttacatttactaa |
129 |
Q |
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| T |
15248050 |
ttcttgtttttgtttccttgatatccattcaatctatgtttacatttactaa |
15248101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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