View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_62 (Length: 220)
Name: NF11400_low_62
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 11729467 - 11729291
Alignment:
| Q |
1 |
tatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatgctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcaca |
100 |
Q |
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|||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729467 |
tatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatgctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcaca |
11729368 |
T |
|
| Q |
101 |
caaccatgattgagaaatagattagagagaacatacataccttctattagtttctttcctctggaccacataatttg |
177 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11729367 |
caaccatgattgagaaatagaatagagagaacatacataccttctattagtttctttcctttggaccacataatttg |
11729291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 23739779 - 23739603
Alignment:
| Q |
1 |
tatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatgctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739779 |
tatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatgctactgaaaatttatttgcaaaagaatgaacacatgtcactggatatcaca |
23739680 |
T |
|
| Q |
101 |
caaccatgattgagaaatagattagagagaacatacataccttctattagtttctttcctctggaccacataatttg |
177 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23739679 |
caaccatgattgagaaatagaatagagagaacatacataccttctattagtttctttcctttggaccacataatttg |
23739603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 23739532 - 23739500
Alignment:
| Q |
172 |
aatttgcggtcgccgatgggtttgcgtttcctc |
204 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
23739532 |
aatttgcggtcgcccatgggtttgcgtttcctc |
23739500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 43043102 - 43043142
Alignment:
| Q |
135 |
acataccttctattagtttctttcctctggaccacataatt |
175 |
Q |
| |
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||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
43043102 |
acatatcttctattagtttctttcctatggactacataatt |
43043142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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