View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11400_low_64 (Length: 203)
Name: NF11400_low_64
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11400_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 36871093 - 36871270
Alignment:
| Q |
10 |
agcagcacagatcttcatgtactcttcaaacacaaattttgggtacacattgtgtttttcctctgtctgtttttccaacaattctggagcagggtaaatg |
109 |
Q |
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| T |
36871093 |
agcagcatagatcttcatgtactcttcaaacacaaattttgggtacacattgtgtttttcctctgtctgtttttccaacaattctggagcagggtaaatg |
36871192 |
T |
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| Q |
110 |
acagcatcactcccagcgttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttcc |
187 |
Q |
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| T |
36871193 |
acagcatcactcccagggttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttcc |
36871270 |
T |
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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 37629884 - 37629798
Alignment:
| Q |
101 |
gggtaaatgacagcatcactcccagcgttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttcc |
187 |
Q |
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| T |
37629884 |
gggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttcc |
37629798 |
T |
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