View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11400_low_7 (Length: 674)

Name: NF11400_low_7
Description: NF11400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11400_low_7
NF11400_low_7
[»] chr1 (1 HSPs)
chr1 (19-665)||(23769151-23769796)


Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Original strand, 23769151 - 23769796
Alignment:
Q  19 accccgaactaagtatccgaatttcatagaattatgtgaaacaaactgatatagtgttcacttaccacatcaaggactccattaggatcaaccaagaaac 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23769151 acccggaactaagtatccgaatttcatagaattatgtgaaacaaactgatatagtgt-cacttaccacatcaaggactccattaggatcaaccaagaaac 23769249  T
Q  119 ctgttagttgtcctttaccatagcaaagaactattggatccatcatcctagtagttgcaagaagnnnnnnnnttattagttctatcacacaaattaggnn 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||      
T  23769250 ctgttagttgtcctttaccatagcaaagaactattggatccatcatcctagtagttgcaagaagaaaaaaaattattagttctatcacacaaattaggtt 23769349  T
Q  219 nnnnnccttataagaaaaaggttgtgactcacctatttccttccatccacccaggaaatggttcatttaaagtgctctcaataacacttggcctaattac 318  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769350 tttttccttataagaaaaaggttgtgactcacctatttccttccatccacccaggaaatggttcatttaaagtgctctcaataacacttggcctaattac 23769449  T
Q  319 aacaactggaatatcttccctcaatttgtcaatcatcatttctcccattgcctttgtgaacacataagtatcttgccatccatatcttctagccctatat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769450 aacaactggaatatcttccctcaatttgtcaatcatcatttctcccattgcctttgtgaacacataagtatcttgccatccatatcttctagccctatat 23769549  T
Q  419 agaaaaatcaaatcaaattaagcttgtgagttttaagaatattcacttaattgatggataaatagatacgttagtttcgagaaaacaaatatagatacat 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23769550 agaaaaatcaaatcaaattaagcttgtgagttttaagaatattcacttaattgatggataaatagatacgttagtttcgagaaaacaaatatagatgcat 23769649  T
Q  519 tatttaagnnnnnnnnaaccatctgatttttcagggaaaaggagttctcgtaattcataattcgatcagaaggtaagtaaagccttattgatgaatgtaa 618  Q
    ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  23769650 tatttaagttttttttaaccatctgatttttcagggaaaaggagttctcgtaattcataattcgatcagaaggtaagtaaagtcttattgatgaatgtga 23769749  T
Q  619 aacataggatcactaaaaatacctctctagacccatctccttcatct 665  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  23769750 aacatagggtcactaaaaatacctctctagacccatctccttcatct 23769796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University