View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11401_high_1 (Length: 556)

Name: NF11401_high_1
Description: NF11401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11401_high_1
NF11401_high_1
[»] chr7 (4 HSPs)
chr7 (1-232)||(28470163-28470394)
chr7 (19-167)||(5229964-5230112)
chr7 (504-540)||(28470666-28470702)
chr7 (414-446)||(28470576-28470608)
[»] chr8 (5 HSPs)
chr8 (3-173)||(12811915-12812085)
chr8 (48-143)||(12772269-12772364)
chr8 (48-143)||(12791129-12791224)
chr8 (19-142)||(34830908-34831031)
chr8 (19-67)||(27527556-27527604)
[»] chr2 (3 HSPs)
chr2 (3-121)||(30642895-30643012)
chr2 (48-133)||(5546362-5546447)
chr2 (46-91)||(2115269-2115314)
[»] chr6 (1 HSPs)
chr6 (46-159)||(22611520-22611633)
[»] chr5 (1 HSPs)
chr5 (21-154)||(20543499-20543632)
[»] chr4 (2 HSPs)
chr4 (3-142)||(45671378-45671517)
chr4 (48-121)||(42506647-42506720)
[»] chr3 (1 HSPs)
chr3 (19-130)||(38396710-38396821)
[»] chr1 (1 HSPs)
chr1 (60-159)||(46039592-46039691)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 28470163 - 28470394
Alignment:
Q  1 gtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470163 gtagagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaact 28470262  T
Q  101 ctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaatttgcaagttcaacttcagggtacccttctctctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470263 ctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaatttgcaagttcaacttcagggtacccttctctctct 28470362  T
Q  201 ttttcattcatctaatattaaaaaatctcacc 232  Q
    ||||||||||||||||||||||||||||||||    
T  28470363 ttttcattcatctaatattaaaaaatctcacc 28470394  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 5229964 - 5230112
Alignment:
Q  19 tgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgc 118  Q
    ||||||||||||| ||||| || ||| | |||||||| ||  | || |||||||||||| | || || ||||| |||||||| || ||||| ||||||||    
T  5229964 tgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgc 5230063  T
Q  119 tgagattgctcttatcattttctcaagtcgtggaaagctttctgaattt 167  Q
    |||| ||||||||||||| ||||| | |||||||||||||| |||||||    
T  5230064 tgaggttgctcttatcatcttctccactcgtggaaagctttatgaattt 5230112  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 28470666 - 28470702
Alignment:
Q  504 catataactattcatggtttctttaaatctgacactt 540  Q
    |||||||||||||||||||||||||||||||||||||    
T  28470666 catataactattcatggtttctttaaatctgacactt 28470702  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 446
Target Start/End: Original strand, 28470576 - 28470608
Alignment:
Q  414 ccaaaatggtcactggtttctgcatttgaacta 446  Q
    |||||||||||||||||||||||||||||||||    
T  28470576 ccaaaatggtcactggtttctgcatttgaacta 28470608  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 12812085 - 12811915
Alignment:
Q  3 agagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactct 102  Q
    ||||| || |||||| ||||||| ||||| |||||||| |||||||| || ||||||||||||||||||||||||||||| || ||||| |||||||| |    
T  12812085 agaggaagagttgaattgaagagaatagagaacaaaataaaccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactgt 12811986  T
Q  103 cagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagctttctgaatttgcaagt 173  Q
    | ||||| |||||||||||  |||| |||||||||||||| || ||||| || || | |||||||| ||||    
T  12811985 ctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaatttggaagt 12811915  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 12772269 - 12772364
Alignment:
Q  48 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctca 143  Q
    ||||| || |||||||| ||||||||||||||| |||| || |||| |||||| |||||  |||||||||||||| ||||||||||  ||||||||    
T  12772269 caagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctca 12772364  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 12791129 - 12791224
Alignment:
Q  48 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctca 143  Q
    ||||| || |||||||| ||||||||||||||| |||| || |||| |||||| |||||  |||||||||||||| ||||||||||  ||||||||    
T  12791129 caagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgctgaggttgctcttattgttttctca 12791224  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 34831031 - 34830908
Alignment:
Q  19 tgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgc 118  Q
    ||||||| || || |||||||||||| | |||||||| ||| | ||| |||| || ||| |  |||||||||| |||||||| || ||||| ||||||||    
T  34831031 tgaagagaattgagaacaaaatcaacagacaagttaccttcgctaaacgaaggaacggtcttttgaaaaaagcttatgaactttctgttctttgtgatgc 34830932  T
Q  119 tgagattgctcttatcattttctc 142  Q
    |||  ||||||||||||| |||||    
T  34830931 tgaagttgctcttatcatcttctc 34830908  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 27527604 - 27527556
Alignment:
Q  19 tgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaag 67  Q
    ||||||||||||||||||| ||||| || || ||||||||||| |||||    
T  27527604 tgaagaggatagaaaacaagatcaatcgtcaggttactttctctaaaag 27527556  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 30643012 - 30642895
Alignment:
Q  3 agagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactct 102  Q
    ||||| || |||||| ||||||| ||||| |||||||| |||| |||||  ||||||||||| ||||||||||||||||| |||||||| |||||||| |    
T  30643012 agaggaagagttgaattgaagagaatagagaacaaaataaaccagcaagcaactttctcaaagagaagaaatggtttgctcaaaaaagcttatgaactgt 30642913  T
Q  103 cagttctatgtgatgctga 121  Q
    | ||||  |||||||||||    
T  30642912 ctgttc-ctgtgatgctga 30642895  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 48 - 133
Target Start/End: Original strand, 5546362 - 5546447
Alignment:
Q  48 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttat 133  Q
    ||||| |||||||  |||||||||||||||||| |||| ||||| |||||| | || ||||| |||||||| ||  ||||||||||    
T  5546362 caagtaactttctgcaaaagaagaaatggtttgttgaagaaagcatatgaattatctgttctttgtgatgcagaagttgctcttat 5546447  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 2115269 - 2115314
Alignment:
Q  46 ggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagc 91  Q
    ||||||| ||||||||||||||||||||||| ||| |||| |||||    
T  2115269 ggcaagtgactttctcaaaaagaagaaatggattgttgaagaaagc 2115314  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 22611520 - 22611633
Alignment:
Q  46 ggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaag 145  Q
    ||||||| || |||||||| ||||||| ||| ||| |||| ||||||| ||| || |  |||||||||||||||||  |||| ||||||||||| |||||    
T  22611520 ggcaagtaacattctcaaagagaagaagtggattgttgaagaaagcctttgagctttgtgttctatgtgatgctgaagttgcacttatcattttttcaag 22611619  T
Q  146 tcgtggaaagcttt 159  Q
     ||||| |||||||    
T  22611620 ccgtggcaagcttt 22611633  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 20543632 - 20543499
Alignment:
Q  21 aagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctg 120  Q
    |||||||| || |||||||| || || |||||||| ||  |||| |||||||||||  ||||||| || || |||||||||||  | || ||||||||||    
T  20543632 aagaggattgagaacaaaataaatcgtcaagttacatttgcaaagagaagaaatggaatgctgaagaaggcttatgaactctctctcctttgtgatgctg 20543533  T
Q  121 agattgctcttatcattttctcaagtcgtggaaa 154  Q
    || ||||||| || |||||||| || ||||||||    
T  20543532 aggttgctctcattattttctctagccgtggaaa 20543499  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 45671378 - 45671517
Alignment:
Q  3 agagggagggttgaactgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactct 102  Q
    |||||||| |||||||| ||||| ||||| |||||| | ||  | ||||| || ||  | || |||||||||||| | || || || || |||||||| |    
T  45671378 agagggagagttgaactaaagagaatagagaacaaagttaatagacaagtcacatttgctaagagaagaaatggtgtactcaagaaggcttatgaacttt 45671477  T
Q  103 cagttctatgtgatgctgagattgctcttatcattttctc 142  Q
    ||||||| |||||||||||  ||||||||||||| |||||    
T  45671478 cagttctttgtgatgctgaagttgctcttatcatcttctc 45671517  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 42506720 - 42506647
Alignment:
Q  48 caagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctga 121  Q
    ||||| ||||||||||| |||||||||||  |||| ||||| |||| |||||| ||||| || |||||||||||    
T  42506720 caagtaactttctcaaagagaagaaatggactgcttaaaaaggcctttgaactttcagtgctttgtgatgctga 42506647  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 38396710 - 38396821
Alignment:
Q  19 tgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgc 118  Q
    ||||||| || || ||||| |||||| | |||||||| ||  ||||| ||||||||||| |  |||||||||| |||||||| || ||||| ||||||||    
T  38396710 tgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgc 38396809  T
Q  119 tgagattgctct 130  Q
     ||| |||||||    
T  38396810 agaggttgctct 38396821  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 46039691 - 46039592
Alignment:
Q  60 tcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgctgagattgctcttatcattttctcaagtcgtggaaagcttt 159  Q
    ||||| ||||||| ||||||| |||| ||||| | |||||| || ||  |||||||||||||  ||||||||||||| ||||| |||| ||| |||||||    
T  46039691 tcaaagagaagaagtggtttgttgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctccagtcttggcaagcttt 46039592  T

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