View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11401_high_5 (Length: 419)
Name: NF11401_high_5
Description: NF11401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11401_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 24 - 406
Target Start/End: Original strand, 3006421 - 3006804
Alignment:
| Q |
24 |
ggattcttagcaatagcatacttgttatatatcaataatcaataattttacttgatgcttcagttttatcgtcaaatcttccatcacattttgtagccag |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3006421 |
ggattcttagcaatagcatacttgttatatatcaataatcaataattttacttgatgcttcagttttatcgtcaaatcttccatcacattttgtagcccg |
3006520 |
T |
|
| Q |
124 |
tagttagcttgacatgcacctgaagatcctactacatattattcttcataacttgataaa-gaaaccattaattgcttcttatatggccatgagatacga |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3006521 |
tagttagcttgacatgcaactgaagatcctactccatattattcttcataacttgataaaagaaaccattaattgcttcttatatggccatgagatacga |
3006620 |
T |
|
| Q |
223 |
tctccttgtaccttaaacacataactaattgtgctcctcctatcaattttatctccacactagtcaccatcagaatagccctactagattaagttgttca |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3006621 |
tctccttgtaccttaaacacataactaattgtgctcctcctatcaattttatctccacactagtcaccatcagaatagtcctactagattaagttgttca |
3006720 |
T |
|
| Q |
323 |
gggattgctcatgaaattctaaagtgcgattttacatcaatagccttcttgccactcggtaacttggtctcctatgtttgattc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3006721 |
gggattgctcatgaaattctaaagtgcgattttacatcaacagccttcttgccacttggtaacttggtctcctatgtttgattc |
3006804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University