View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11401_low_11 (Length: 290)
Name: NF11401_low_11
Description: NF11401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11401_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4008527 - 4008249
Alignment:
| Q |
1 |
tctaaatcagttttaggatttcaaggtttaaataatgcatgttggagctattatgattggcctgctatctatactacctattgtgctacaaactaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4008527 |
tctaaatcagttttaggatttcaaggtttaaataatgcatgttggagctattatgattggcctgctatctatactacctattgtgctacaaactaaagaa |
4008428 |
T |
|
| Q |
101 |
gctaaattgctcaatcattacccagttcaatttagcatctatgtcttgcagtcaataagagttcggcatccttttggccgaaatttctgcgtgttgaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4008427 |
gctaaattgctcaatcattacccagttcaatttagcatctatgtcttgcagtcaataagagttcagcatccttttggccgaaatttctgcgtgttgaaca |
4008328 |
T |
|
| Q |
201 |
agtggagacgaacaaaataaaccatattttgacttcaacttcacatcttgtgcttcagctcctgaaactgtttgttcat |
279 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4008327 |
agtggagacgaacaaaataaaccatattttgacttcaacttcacatcttgtgcttcagctcctgaaactgtttgttcat |
4008249 |
T |
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