View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11401_low_15 (Length: 246)
Name: NF11401_low_15
Description: NF11401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11401_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 51216380 - 51216594
Alignment:
| Q |
21 |
tactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216380 |
tactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggc |
51216479 |
T |
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| Q |
121 |
tcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216480 |
tcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggt |
51216579 |
T |
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| Q |
221 |
ggcacctatgcttct |
235 |
Q |
| |
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||||||||||||||| |
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| T |
51216580 |
ggcacctatgcttct |
51216594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 29934011 - 29933829
Alignment:
| Q |
19 |
attactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtg |
118 |
Q |
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|||||||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | ||||||| |||| || || | || |
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| T |
29934011 |
attactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtgcaagatgcacttgactgtgttatggtggaccgaacaacaataatagta |
29933912 |
T |
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| Q |
119 |
gctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
201 |
Q |
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|||||||| ||||| || |||||||||||| ||| ||||||||| ||||| ||||| ||||| |||||||||||||||||| |
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| T |
29933911 |
gctcataggttatcgactataaagggtgcagatttaattgcagtcgttaagaatggtgtgatatcagagaaaggaaaacatga |
29933829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 51149155 - 51149337
Alignment:
| Q |
19 |
attactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtg |
118 |
Q |
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|||||||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | |||||| |||| || || | ||| |
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| T |
51149155 |
attactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtg |
51149254 |
T |
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| Q |
119 |
gctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
201 |
Q |
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|| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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| T |
51149255 |
gcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51149337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 51160018 - 51160200
Alignment:
| Q |
19 |
attactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtg |
118 |
Q |
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|||||||||||| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | |||||| |||| || || | ||| |
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| T |
51160018 |
attactagatgaagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtg |
51160117 |
T |
|
| Q |
119 |
gctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
201 |
Q |
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|| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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| T |
51160118 |
gcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51160200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 51202717 - 51202899
Alignment:
| Q |
19 |
attactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtg |
118 |
Q |
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|||||||||||| || || ||||| |||||||| |||||||| || ||||| |||||||||||||| | || | |||||| |||| || || | ||| |
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| T |
51202717 |
attactagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtg |
51202816 |
T |
|
| Q |
119 |
gctcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
201 |
Q |
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|| ||||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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| T |
51202817 |
gcgcataggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51202899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 49734122 - 49733908
Alignment:
| Q |
21 |
tactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggc |
120 |
Q |
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|
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49734122 |
tactagatgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattgagggtggacagaaccaccattgtggtggc |
49734023 |
T |
|
| Q |
121 |
tcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggt |
220 |
Q |
| |
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||||||| |||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||| |||||||| || |
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| T |
49734022 |
tcatagactatctaccataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaaggaaagcatgaaacgttgctcaacaagagt |
49733923 |
T |
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| Q |
221 |
ggcacctatgcttct |
235 |
Q |
| |
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|| |||||||||||| |
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| T |
49733922 |
ggtacctatgcttct |
49733908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 36289050 - 36289245
Alignment:
| Q |
21 |
tactagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggc |
120 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||| ||| |||| | ||| ||| ||||||| ||| | ||||| |
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| T |
36289050 |
tactagatgaagccaccagtgcccttgatgctgagtccgaaaaagtagttcaggatgcactggatcgagttatggttgaccgaaccacaattatagtggc |
36289149 |
T |
|
| Q |
121 |
tcatagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaa |
216 |
Q |
| |
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|| || ||||| || || ||||||||| ||| ||||||||| || || ||||| || ||| |||||||||||| ||||| | |||||||||||| |
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| T |
36289150 |
acacaggttatccactattaagggtgcagatttaattgcagtggtgaagaatggggtcattacagagaaaggaaatcatgaaacattgatcaacaa |
36289245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 42691605 - 42691545
Alignment:
| Q |
26 |
gatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgata |
86 |
Q |
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||||||||||| |||||||||||| ||||||| ||||| |||||||||| |||||||||| |
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|
| T |
42691605 |
gatgaggccactagtgcccttgattcagagtcagaaaagctggttcaagaagcacttgata |
42691545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 49736890 - 49736838
Alignment:
| Q |
23 |
ctagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaaga |
75 |
Q |
| |
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|||||||| || |||||||||||||| |||||||| |||| |||||| ||||| |
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| T |
49736890 |
ctagatgaagcaacaagtgcccttgacgcagagtcggaaagagtggtacaaga |
49736838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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