View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11401_low_2 (Length: 499)
Name: NF11401_low_2
Description: NF11401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11401_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Complemental strand, 53796636 - 53796158
Alignment:
| Q |
18 |
acatcaggtctattagtagcagccaagacaataacacccgaattaccagaaaatccatccatctcagtcaaaagctgattaatagtctgttccctctcat |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53796636 |
acatcaggtctattagtagcagccaagacaataacgcccgaattaccagaaaatccatccatctcagtcaaaagctgattaatagtctgttccctctcat |
53796537 |
T |
|
| Q |
118 |
catttccaccaccaagaccagctcctctctgtctcccaacagcatcaatctcatcaataaacacaatgcacggtgccttcgacttcgccttctcaaacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53796536 |
catttccaccaccaagaccagctcctctctgtctcccaacagcatcaatctcatcaataaacacaatgcacggtgccttcgacttcgccttctcaaacaa |
53796437 |
T |
|
| Q |
218 |
atccctaactctagaagcaccaactcccacaaacagttccacaaactccgaagccgcacatgaaaagaacggtgtaccagcttcaccggccactgccctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53796436 |
atccctaactctagaagcaccaactcccacaaacagttccacaaactccgaagccgcacatgaaaagaacggtgtaccagcttcaccggccactgccctc |
53796337 |
T |
|
| Q |
318 |
gccaacaatgtctttccagttccaggtggccccactaaaagacatcctttaggaatcttagcgcctaaagcagtgtacttatcaggattcttcaagaaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53796336 |
gccaacaatgtctttccagttccaggtggccccactaaaagacatcctttaggaatcttagcgcctaaagcagtgtacttatcaggattcttcaagaaat |
53796237 |
T |
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| Q |
418 |
caacaacttcttgtagttccaatttcgcttgatcagcaccggccacatcagcaaaagttactccagtctctggtacttc |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53796236 |
caacaacttcttgtagttccaatttcgcttgatcagcaccggccacatcagcaaaagttactccagtctctggtacttc |
53796158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 2726586 - 2726743
Alignment:
| Q |
21 |
tcaggtctattagtagcagccaagacaataacacccgaattaccagaaaatccatccatctcagtcaaaagctgattaatagtctgttccctctcatcat |
120 |
Q |
| |
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|||||||||||||||||||| | || |||||||| | ||||| | ||| |||||||| |||||||| | |||||| | || ||||| || ||||||| |
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| T |
2726586 |
tcaggtctattagtagcagcaataactataacaccagtattactattaaaaccatccatttcagtcaacaactgattcaatgtttgttctctttcatcat |
2726685 |
T |
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| Q |
121 |
ttccaccaccaagaccagctcctctctgtctcccaacagcatcaatctcatcaataaa |
178 |
Q |
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| T |
2726686 |
tccctccaccaataccagtacctctctgtctccctacagcatctatctcatcaataaa |
2726743 |
T |
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