View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11401_low_3 (Length: 447)
Name: NF11401_low_3
Description: NF11401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11401_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Complemental strand, 22915211 - 22914791
Alignment:
| Q |
11 |
cagagacatatttgaatttggatttacaatttgaaagacaattcctagattgcacaaattgggagcatggtcgaccttctgctatgaattccactgtaaa |
110 |
Q |
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| T |
22915211 |
cagagacatttttgaatttggatttacaatttgaaagacaattcctagattgcacaaattgggagcatggtcgaccttctgctatgaattccactgtaaa |
22915112 |
T |
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| Q |
111 |
aaccaacaaattaattaggaaaaattcaagttaaaagatttaactagaattaccacaagtnnnnnnnnnnnnnn-gattttggagaatggattgccatta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22915111 |
aaccaacaaattaattaggaaaaattcaagttaaaagatttaactagaattaccacaagtaaaaaaaagtagaaagattttggagaatggattgccatta |
22915012 |
T |
|
| Q |
210 |
aacaacaattctttgctgagctttaatgagttgttgttatttatattgactcaagaagatgaccataagtacgaacgaacacagtgtacagatgctggct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22915011 |
aacaacaattctttgctgagctttaatgagttgttgttatttatattgactcaagaagatgaccataagtacgaacgaacacagtgtacagatgctggct |
22914912 |
T |
|
| Q |
310 |
tgtttaagtctttagcaagttcaacctgcatgttcagagacgtcttaatgcaagaaacgaccgtcatttgtcattgatacatgattatacattaaaatta |
409 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22914911 |
tgtttaactctttagcaagttcaacctgcatgttcagagacgtcttaatgcaagaaacgaccgtcatttgtcattgatacatgattatacattaaaatta |
22914812 |
T |
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| Q |
410 |
cagcttggtttcattttatct |
430 |
Q |
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| T |
22914811 |
cagcttggtttcattttatct |
22914791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 10352737 - 10352683
Alignment:
| Q |
284 |
acgaacacagtgtacagatgctggcttgtttaagtctttagcaagttcaacctgc |
338 |
Q |
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||||||||| |||||||||||||| |||||||| |||||||||||||||| |||| |
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| T |
10352737 |
acgaacacaatgtacagatgctggtttgtttaactctttagcaagttcaagctgc |
10352683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 10352606 - 10352562
Alignment:
| Q |
359 |
gcaagaaacgaccgtcatttgtcattgatacatgattatacatta |
403 |
Q |
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|||||||| ||||||| |||||||||||||||||||||| ||||| |
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| T |
10352606 |
gcaagaaaggaccgtcttttgtcattgatacatgattattcatta |
10352562 |
T |
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