View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11401_low_4 (Length: 443)
Name: NF11401_low_4
Description: NF11401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11401_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Complemental strand, 46714354 - 46713946
Alignment:
| Q |
11 |
cagagacagatataagaagccgtaaaagaagattgacatatcatcattctgtacactttccaagtaagaatctggaacaagactttgctcttcagtcaaa |
110 |
Q |
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| T |
46714354 |
cagagacagatataagaagccgtaaaagaagattgacatatcatcattctgtacactttccaagtaagaatctggaacaagattttgctcttcagtcaaa |
46714255 |
T |
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| Q |
111 |
gaaagaatcagtgaataccaatgcaactatagatggtctatgcgatgatcaattttataatgatattgatcttgatgagttggaggcgcaagcaacttcg |
210 |
Q |
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| T |
46714254 |
gaaagaatcagtgaataccaatgcaactatagatggtctatgcgatgatcaattttataatgatattgatcttgatgagttggaggcgcaagcaacttcg |
46714155 |
T |
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| Q |
211 |
attctaaaacggaaattagatccgtcgattcaaaagcaagatacaaaccctcaatctcatgagccgaacctggatgttattatgtctccatccttcgacc |
310 |
Q |
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| T |
46714154 |
attctaaaacggaaattagatccttcgattcaaaagcaagatacaaaccctcaatctcatgagccgaacctggatgttattatgtctccatcctttgacc |
46714055 |
T |
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| Q |
311 |
ttggtatatgataagcaccacataagccctcatgcggctggttacctgcacattttggaaattagttaatgttaataatccattaacagttattgtcttt |
410 |
Q |
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| T |
46714054 |
ttggtatatgataagcaccacataagccctcatgcggctggttacctgcacattttggaaattagttaatgttaataatccattaacagttattgtc-tt |
46713956 |
T |
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| Q |
411 |
tatttttatt |
420 |
Q |
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| T |
46713955 |
tatttttatt |
46713946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 327
Target Start/End: Complemental strand, 14252912 - 14252722
Alignment:
| Q |
137 |
ctatagatggtctatgcgatgatcaattttataatgatattgatcttgatgagttggaggcgcaagcaacttcgattctaaaacggaaattagatccgtc |
236 |
Q |
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|||||| || ||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||| |||| | || || || || |
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| T |
14252912 |
ctatagctgttctatatgatgatcagttctataatgatattgatcttgatgagttcgaggcacaagcaacttcgattttaaagcataatatatatttatc |
14252813 |
T |
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| Q |
237 |
gattcaaaagcaagatacaaaccctcaatctcatgagccgaacctggatgttattatgtctccatccttcgaccttggtatatgataagca |
327 |
Q |
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| T |
14252812 |
aattcaatagctagatacaaacccttaatctcatgaactgaaccatgatgttagtatgtttccttcattcgactttggtatatgataagca |
14252722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 14253008 - 14252937
Alignment:
| Q |
11 |
cagagacagatataagaagccgtaaaagaagattgacatatcatcattctgtacactttccaagtaagaatc |
82 |
Q |
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|||||||||||||||||||||| |||||||||||| | |||| ||||| ||| |||||||||| ||||| |
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| T |
14253008 |
cagagacagatataagaagccgcaaaagaagattggatttgcatccttctggacattttccaagtatgaatc |
14252937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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