View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11401_low_8 (Length: 349)
Name: NF11401_low_8
Description: NF11401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11401_low_8 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 3 - 333
Target Start/End: Original strand, 10647898 - 10648228
Alignment:
| Q |
3 |
caaaggctgaatgtcatactatattactaactttatatagtaaaccaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcgg |
102 |
Q |
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| T |
10647898 |
caaaggctgaatgtcataccatattactaactttatatagtaaactaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcgg |
10647997 |
T |
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| Q |
103 |
tgtttcacactttcactagtaaaatattgttgggtgactagtcaaggttgctcaacttttgaaattgacatcgagggatcaacacaagtcactcaggagt |
202 |
Q |
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| T |
10647998 |
tgtttcacacattcactagtaaaatattgttgggtgactagtcaaggttgctcaactttcaaaattgacatcgagggatcaacacaagtcactcaggagt |
10648097 |
T |
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| Q |
203 |
tccacaacaggcatatagattttgtgaatcacccaaaaggcctcgtaattggcctccactgtcccaattcatatatattatcccccgcctaatcattctc |
302 |
Q |
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| T |
10648098 |
tccacaacaggcatatagattttgtgaatcacccacaaggcctcgtaattggcctccactgtcccaattcatatatattatcccccgccgaatcattctc |
10648197 |
T |
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| Q |
303 |
caatatatgatgcatgttacacacaataaat |
333 |
Q |
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| T |
10648198 |
caatatatgatgcatgttacacacaataaat |
10648228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 288
Target Start/End: Complemental strand, 8588 - 8324
Alignment:
| Q |
29 |
ctaactttatatagtaaaccaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcggtgtttcacactttcactagtaaaata |
128 |
Q |
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| T |
8588 |
ctaactctagatagtagactaggagtacatgttcagcgtctctattgaagcaacacctcactagttgacttcgatgctttacattctcactagtaaaata |
8489 |
T |
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| Q |
129 |
ttgttgggtgactagtcaaggttgctcaacttttgaaatt------gacatcgagggatcaacacaagtcactcaggagttccacaacaggcatatagat |
222 |
Q |
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| T |
8488 |
ttgtcaggtgattagtcagggctgtccagctttataagtttgtcccgacatcgtgggatcaacacgagtcacataggagttccacaccagacatataga- |
8390 |
T |
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| Q |
223 |
tttgtgaatcacccaaaaggcctcgtaattggcctccactgtcccaattcatatatattatccccc |
288 |
Q |
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| T |
8389 |
ttcgtaaatcaccctcaaggcccagtaattggcctccaccatcccaattcatatttactatccccc |
8324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 12178996 - 12178890
Alignment:
| Q |
40 |
tagtaaaccaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcggtgtttcacactttcactagtaaaatattgttgggtga |
139 |
Q |
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| T |
12178996 |
tagtagactaggagtacatgttcagcgtctctattgaagcaacacctcactggttaacttcgatgctttacactctcactagtaaaatattgtcaggtga |
12178897 |
T |
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| Q |
140 |
ctagtca |
146 |
Q |
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| T |
12178896 |
ctagtca |
12178890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 8680785 - 8680692
Alignment:
| Q |
39 |
atagtaaaccaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcggtgtttcacactttcactagtaaaatattgt |
132 |
Q |
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| T |
8680785 |
atagtataccaggagtacatgtccaacgtctttgttgaaggaacaccatactagtttacttcggtgcttgacactctcactagtaaaatattgt |
8680692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 319
Target Start/End: Complemental strand, 12178802 - 12178710
Alignment:
| Q |
229 |
aatcacccaaaaggcctcg-taattggcctccactgtcccaattcatatatattatcc-cccgcctaatcattctccaatatatgatgcatgt |
319 |
Q |
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| T |
12178802 |
aatcaccctcaaggcctcggtatttagcctccaccttcccaattcatatatactatccacccgcctaatcactgtctataatatgatgcatgt |
12178710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 10301128 - 10301226
Alignment:
| Q |
29 |
ctaactttatatagtaaaccaggagtacatgtgcaacgtctctattgaagtaacacctcactagttaacttcggtgtttcacactttcactagtaaaat |
127 |
Q |
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| T |
10301128 |
ctaactctagatagtagactaggaatacatgtttagcatctcttttgaagcaacatctcacgggttgacttcggtgcttcacactttcattagtaaaat |
10301226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 292
Target Start/End: Original strand, 10301272 - 10301393
Alignment:
| Q |
169 |
gacatcgagggatcaacacaagtcactcaggagttccacaacaggcatatagattttgtgaatcacccaaaaggcctcgtaattggcctccactgtccca |
268 |
Q |
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||||||| ||||||| ||| |||||| ||||||| || | ||| ||||||||||| || |||||| || |||| |||||||||||||||| ||||| |
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| T |
10301272 |
gacatcgtgggatcagcacgagtcacctaggagtttcagaccagacatatagattt-gtagatcacctaa--ggccccgtaattggcctccaccatccca |
10301368 |
T |
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| Q |
269 |
attcatatatattatc-ccccgcct |
292 |
Q |
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|||||||| || |||| |||||||| |
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| T |
10301369 |
attcatatctactatctccccgcct |
10301393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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