View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11401_low_9 (Length: 334)
Name: NF11401_low_9
Description: NF11401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11401_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 5500849 - 5501152
Alignment:
| Q |
19 |
tgttcaacatgagcagccttacagaaattaatctatatagttcatctctaataggtcaagttccttctatgtctgggagatggaatctctgcaagcttcg |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5500849 |
tgttcaacatgagcggccttacagaaattaatctatatagttcatctctaataggtcaagttccttctatgtctgggagatggaacctctgcaagcttcg |
5500948 |
T |
|
| Q |
119 |
aagtcttgtcctatcatctaattatctaactggtgatataacagaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttgcatttgagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5500949 |
gagtcttgtcctatcatctaattatctaactggtgatataacagaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttggatttgagt |
5501048 |
T |
|
| Q |
219 |
caaaatcaactaactgggaaattgccacgttctttggggacgtttaacaaactgtttagtcttgacctgtcaagaaactcagcgaactcgcactcaggta |
318 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5501049 |
caaaatcaactaagtgggaaattgccccgttctttggggatgtttaacaaactgtttagtgttgacctgtcaagaaactcaatgaactcgcactcaggta |
5501148 |
T |
|
| Q |
319 |
tctc |
322 |
Q |
| |
|
|||| |
|
|
| T |
5501149 |
tctc |
5501152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 60 - 322
Target Start/End: Original strand, 5495858 - 5496120
Alignment:
| Q |
60 |
tcatctctaataggtcaagttccttctatgtctgggagatggaatctctgcaagcttcgaagtcttgtcctatcatctaattatctaactggtgatataa |
159 |
Q |
| |
|
||||||||||| |||| |||||||||||| || |||||||| || ||||| |||| | ||| | |||||||||||||| | | |||||||||||| |
|
|
| T |
5495858 |
tcatctctaatcggtctcgttccttctatgctaggaagatggaagctttgcaaacttcaagttctagacctatcatctaattttattactggtgatatag |
5495957 |
T |
|
| Q |
160 |
cagaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttgcatttgagtcaaaatcaactaactgggaaattgccacgttctttggggac |
259 |
Q |
| |
|
| || | ||||||||||||||||| ||||||| ||||||| ||||||| |||||||| | || |||||||||||||||||||| | |||||| |||| |
|
|
| T |
5495958 |
ctgataccattgaggccatgtcttgtagcaaccaaagtttgatgttgttggatttgagttataaccaactaactgggaaattgcctcattctttagggaa |
5496057 |
T |
|
| Q |
260 |
gtttaacaaactgtttagtcttgacctgtcaagaaactcagcgaactcgcactcaggtatctc |
322 |
Q |
| |
|
||||| ||| |||||||| |||||| | ||||||||| ||| || || ||||||||| |||| |
|
|
| T |
5496058 |
gtttaccaatctgtttaggcttgacatatcaagaaacacagtaaattcacactcaggtgtctc |
5496120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 59 - 242
Target Start/End: Original strand, 5485112 - 5485295
Alignment:
| Q |
59 |
ttcatctctaataggtcaagttccttctatgtctgggagatggaatctctgcaagcttcgaagtcttgtcctatcatctaattatctaactggtgatata |
158 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||| ||||||||||||| ||| |||||| ||||| ||| |||||||||||| |
|
|
| T |
5485112 |
ttcatctctaataggtatcattccttctattcttggaagatggaagctctgcaagcttcaggttctacagctatcaaataattttcttactggtgatata |
5485211 |
T |
|
| Q |
159 |
acagaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttgcatttgagtcaaaatcaactaactgggaaattg |
242 |
Q |
| |
|
|| |||||||| |||| | ||||||| ||||||| |||||||| | ||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
5485212 |
actgaaatgatcgaggtcgtgtcttggagcaaccaaagtttggagatgttggatttgagtcaaaatcaattaaatgggaaattg |
5485295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 5476910 - 5477001
Alignment:
| Q |
19 |
tgttcaacatgagcagccttacagaaattaatctatatagttcatctctaataggtcaagttccttctatgtctgggagatggaatctctgc |
110 |
Q |
| |
|
||||||||||||| | |||||||||| | ||||| || |||||||||||||||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
5476910 |
tgttcaacatgagtacccttacagaactcaatctttacgcatcatctctaataggtcctattccttctatgtttggaagatggaatctctgc |
5477001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 5467335 - 5467500
Alignment:
| Q |
79 |
ttccttctatgtctgggagatggaatctctgcaagcttcgaagtcttgtcctatcatctaattatctaactggtgatataacagaaatgattgaggccat |
178 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||| ||||||| ||| | ||||||||||||| ||||||| ||||||||| || | || |||||| | |
|
|
| T |
5467335 |
ttccttctatgcttgggaaatggaatcttcacaatcttcgaaatctagacctatcatctaatgatctaaccattgatataactcaagtaatggaggcctt |
5467434 |
T |
|
| Q |
179 |
gtcttgcagcaacctaagtttgg-ggttgttgcatttgagtcaaaatcaactaactgggaaattgcc |
244 |
Q |
| |
|
|||||| ||||||| ||| ||| |||| | | |||||| | | ||||||||||||||||||||||| |
|
|
| T |
5467435 |
gtcttgtagcaaccaaagcctggaggttctag-atttgaattataatcaactaactgggaaattgcc |
5467500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 5481977 - 5482209
Alignment:
| Q |
21 |
ttcaacatgagcagccttacagaaattaatctatatagttcatctctaataggtcaagttccttctatgtctgggagatggaatctctgcaagcttcgaa |
120 |
Q |
| |
|
|||||||||||||| || | |||| | |||| | || |||||||||||||||||| | || | ||||| | | ||||||||||||| |||||| | |
|
|
| T |
5481977 |
ttcaacatgagcagtctcatagaactagatctttgtaattcatctctaataggtcaggctcttcctatgcttagtagatggaatctctacaagctccagc |
5482076 |
T |
|
| Q |
121 |
gtcttgtcctatcatctaattatctaactggtgatataacagaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttgcatttgagtca |
220 |
Q |
| |
|
|| | ||| |||| |||||||||||| ||||||| ||| |||| |||||||||| ||||||| | |||| ||| || ||| || ||||| || |
|
|
| T |
5482077 |
aactagacctgtcatataattatctaacaggtgatacaactgaaacgattgaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtag |
5482176 |
T |
|
| Q |
221 |
aaatcaactaactgggaaattgccacgttcttt |
253 |
Q |
| |
|
||||||||||||||||||||||| | |||||| |
|
|
| T |
5482177 |
taatcaactaactgggaaattgcctcattcttt |
5482209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University