View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11402_high_17 (Length: 378)

Name: NF11402_high_17
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11402_high_17
NF11402_high_17
[»] chr3 (17 HSPs)
chr3 (14-354)||(20016412-20016752)
chr3 (23-297)||(19811902-19812176)
chr3 (21-267)||(20036826-20037072)
chr3 (21-269)||(19838034-19838282)
chr3 (21-294)||(19955700-19955973)
chr3 (19-323)||(19818153-19818457)
chr3 (20-267)||(19950776-19951023)
chr3 (20-267)||(19989174-19989421)
chr3 (21-294)||(20045748-20046021)
chr3 (21-219)||(19853212-19853410)
chr3 (21-267)||(19848639-19848885)
chr3 (14-321)||(26646608-26646915)
chr3 (21-255)||(19857734-19857969)
chr3 (41-135)||(20005225-20005319)
chr3 (53-135)||(19943503-19943585)
chr3 (53-135)||(24840226-24840308)
chr3 (53-255)||(26651697-26651899)
[»] chr5 (4 HSPs)
chr5 (20-354)||(9814602-9814936)
chr5 (22-267)||(26355148-26355393)
chr5 (53-135)||(38435383-38435465)
chr5 (246-354)||(2319479-2319587)
[»] chr1 (1 HSPs)
chr1 (22-255)||(1716875-1717111)
[»] chr7 (3 HSPs)
chr7 (246-354)||(48259459-48259567)
chr7 (246-354)||(45887492-45887600)
chr7 (246-354)||(47331680-47331788)
[»] chr4 (1 HSPs)
chr4 (246-354)||(55864471-55864579)
[»] chr8 (1 HSPs)
chr8 (14-161)||(22652301-22652448)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 354
Target Start/End: Original strand, 20016412 - 20016752
Alignment:
Q  14 agtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtat 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016412 agtgagatgaaaacaggatcgccaatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtat 20016511  T
Q  114 ttgtcttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016512 ttgtcttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctg 20016611  T
Q  214 cttccacacagattcatgctttggtttaagctgatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgac 313  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016612 cttccacacagattcatactttgttttaagctgatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgac 20016711  T
Q  314 tcctttggatgaaagacacgagacattgatgatggattaaa 354  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20016712 tcctttggatgaaagacacgagacattgatgatggattaaa 20016752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 19812176 - 19811902
Alignment:
Q  23 aaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttag 122  Q
    |||| |||||| || |||| ||||||||| ||||||||||||||||||||||||||||| || |||||| |||||||||| ||||| || || |||| |     
T  19812176 aaaataggatcaccaatgatagggtaaccccccaaaaccataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcac 19812077  T
Q  123 aacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccacac 222  Q
    |||||||||||||  ||||| || | ||||| ||| ||||| | |||||| |||||||||| |||||||||||||||||||||| | | | ||||||||     
T  19812076 aacaccatttctcaacaaccccaaagagcaattttagatttttgagtatgtgacacttggtactcataatagcatcaaagattctagctttcttccacaa 19811977  T
Q  223 agattcatgctttggtttaagctgatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatg 297  Q
    |||||||| |||||||||||||| ||||||||| | |||||| || ||||||||||| ||||| ||| |||||||    
T  19811976 agattcatactttggtttaagctcatcaacccatctaacccacttctcttgtgggtgacgccatccactgaaatg 19811902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 20036826 - 20037072
Alignment:
Q  21 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 120  Q
    ||||||||||||| || |  ||||| ||||| || | |||||| |||||||||||| ||| ||| |||||| |||| | |||||||||||||||||||||    
T  20036826 tgaaaacaggatcaccaagaacaggataacctcctagaaccatgatatcctccaaaatgactgttgcttcaccaaaggaaaacacaaatgtatttgtctt 20036925  T
Q  121 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 220  Q
     ||||||||||||||| ||||| |||||||||||||||||| | |  |||||  |||||| |||  |||||||||||||||||||||||| | |||||||    
T  20036926 ggaacaccatttctccacaaccccatatagcaagttttgatctttatgtatgtaacacttagtggccataatagcatcaaagattccaactttcttccac 20037025  T
Q  221 acagattcatgctttggtttaagctgatcaacccaacaaacccattt 267  Q
    ||||||||||  ||| ||||||| | || ||||||| ||||||||||    
T  20037026 acagattcatagttttgtttaagtttatgaacccaagaaacccattt 20037072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 19838282 - 19838034
Alignment:
Q  21 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 120  Q
    ||||||||| ||| || |||||||||||||| ||||||||||| | ||| |||||||||||||| || ||| |||||||||||||||||||||| ||||     
T  19838282 tgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtattggtctc 19838183  T
Q  121 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 220  Q
    | | |||||||||||  |||| ||| ||| |||||||| |||| |  | |||   || || || ||||| |||||||||||||||||||| | | ||||     
T  19838182 acagcaccatttctcaacaacttcaaataacaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagattccaactttcctccaa 19838083  T
Q  221 acagattcatgctttggtttaagctgatcaacccaacaaacccatttgt 269  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  19838082 acagattcatactttggtttaagcttatcaacccaacaaacccatttgt 19838034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 19955973 - 19955700
Alignment:
Q  21 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 120  Q
    ||||||||| ||| || |||||||||||||| ||||||||||| | ||| |||||||||||||| || ||| |||||||||||||||||||||||||||     
T  19955973 tgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtatttgtctc 19955874  T
Q  121 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 220  Q
    | |||||||||||||  ||||  || |||||||||||| |||| |  | |||   || || || ||||| |||||||||||||||||||| | | ||||     
T  19955873 acaacaccatttctcaacaactccaaatagcaagtttttatttttatgaatgtagcatttagtactcattatagcatcaaagattccaactttcctccaa 19955774  T
Q  221 acagattcatgctttggtttaagctgatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaa 294  Q
    |||||||||| |||| ||||||| | || ||||||| |||||||||| | ||||| | ||||||| ||||||||    
T  19955773 acagattcatacttttgtttaagtttatgaacccaagaaacccatttcttttgtgtgaggcgccagccagtgaa 19955700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 19818457 - 19818153
Alignment:
Q  19 gatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtc 118  Q
    ||||||||||||||| || |||| ||| ||||| |||||||| || | ||||||||||||||| || || ||| |||||||||| ||||| || || |||    
T  19818457 gatgaaaacaggatcaccaatgataggataaccccccaaaactatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtc 19818358  T
Q  119 ttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcc 218  Q
    | | |||||||||||||  ||||| || ||||||||||||||||| |  | |||   || || || |||||||||||||||||||||| | | | |||||    
T  19818357 tcacaacaccatttctcaacaaccccaaatagcaagttttgatttttatgaatgtagcatttagtactcataatagcatcaaagattctagctttcttcc 19818258  T
Q  219 acacagattcatgctttggtttaagctgatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctt 318  Q
    |||||||||||| |||||||||||| | ||||||||||| || |||||| |||||| | |||||||| ||| ||||||| |  ||||||||  |||| ||    
T  19818257 acacagattcatactttggtttaagttcatcaacccaactaaaccatttctcttgttgttggcgccatccattgaaatgtattttcaaaggacactcatt 19818158  T
Q  319 tggat 323  Q
    |||||    
T  19818157 tggat 19818153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 19951023 - 19950776
Alignment:
Q  20 atgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtct 119  Q
    |||||||||||||| || |  ||||||||||| ||||||||||||| ||||||||||||||| || || ||| |||||||||||||||||||||| ||||    
T  19951023 atgaaaacaggatcaccaagaacagggtaaccccccaaaaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaatgtattggtct 19950924  T
Q  120 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 219  Q
     || ||||||||||||  ||||| || | |||||||| |||||| |  ||||    |  || || |||||||||||||||||||||||| | | ||||||    
T  19950923 cagtacaccatttctcaacaaccccaaaaagcaagttatgatttttatgtattatgcttttagtactcataatagcatcaaagattccagctttcttcca 19950824  T
Q  220 cacagattcatgctttggtttaagctgatcaacccaacaaacccattt 267  Q
    ||||||||||| ||||||||||||||| |||| ||||||  |||||||    
T  19950823 cacagattcatactttggtttaagctgctcaaaccaacattcccattt 19950776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 19989421 - 19989174
Alignment:
Q  20 atgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtct 119  Q
    |||||||||||||| || |  | ||||||||| || |||||||||| ||| ||||||||||| || || ||| |||||||||| |||||||| |||||||    
T  19989421 atgaaaacaggatcaccaagaatagggtaaccccctaaaaccataacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtct 19989322  T
Q  120 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 219  Q
     | |||||||||||||  ||||| || |||||||||| |||| | ||  ||||| ||||||||| ||||||||||| |||||||| ||||| | ||||||    
T  19989321 cacaacaccatttctcaacaaccccaaatagcaagttatgatctttctttatgcaacacttggtactcataatagcttcaaagatgccaactttcttcca 19989222  T
Q  220 cacagattcatgctttggtttaagctgatcaacccaacaaacccattt 267  Q
    |||| |||||   || |||||||| |||||||||||| ||||||||||    
T  19989221 cacatattcaaatttgggtttaagttgatcaacccaataaacccattt 19989174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 20046021 - 20045748
Alignment:
Q  21 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 120  Q
    |||||||| ||||||| |||| ||||||||| |||||||| || ||||||||||| || ||||| |  ||| |||| ||||| | |||||||||||| |     
T  20046021 tgaaaacatgatcgccaatgatagggtaacctcccaaaacaatgatatcctccaaggttattgttgtctcaccaaagggaaaaataaatgtatttgtatc 20045922  T
Q  121 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 220  Q
    | |||||||||||||| ||||| | | ||| ||||| |||||| | || |||| |||||| | | |||||||||| |||||||||||||| | |||||||    
T  20045921 acaacaccatttctccacaaccccttgtagtaagttctgatttttaagaatgcaacactttgagttcataatagcttcaaagattccaacttccttccac 20045822  T
Q  221 acagattcatgctttggtttaagctgatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaa 294  Q
    || ||||||   |||||||| || | ||||| ||||| ||||||||| | ||| ||||||||||||||||||||    
T  20045821 accgattcaaattttggtttgagtttatcaagccaactaacccatttttgttgagggtggcgccacccagtgaa 20045748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 19853410 - 19853212
Alignment:
Q  21 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 120  Q
    |||||| |||||| || |||| ||||||||| ||||||||||||| |||||||||||| ||||| |||||| ||||||| |||||||||||||| ||||     
T  19853410 tgaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgtattggtctc 19853311  T
Q  121 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 219  Q
    |||||||||||| ||  ||||| || ||| ||||||||||| | ||  |||||  | ||| || |||||||||||||||||||||||||| | ||||||    
T  19853310 agaacaccatttgtcaacaaccccacataacaagttttgatctttctttatgcagctcttagtactcataatagcatcaaagattccaactttcttcca 19853212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 19848885 - 19848639
Alignment:
Q  21 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctt 120  Q
    ||||||||||||| || |  ||||| ||||| || | |||||| |||||||||||||||||||| |||||| |||| | ||||||||| |||||||| ||    
T  19848885 tgaaaacaggatcaccaagaacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatttgtatt 19848786  T
Q  121 agaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccac 220  Q
    || ||||||||||||  | ||| ||  |||||||||||||||| |   || |   ||||| |||  |||||||||||||||||||||||| | |||||||    
T  19848785 aggacaccatttctcaactaccccaactagcaagttttgatttttatttaagtagcacttagtggccataatagcatcaaagattccaactttcttccac 19848686  T
Q  221 acagattcatgctttggtttaagctgatcaacccaacaaacccattt 267  Q
    ||||||||||  ||| ||||||| | || ||||||| ||||||||||    
T  19848685 acagattcatagttttgtttaagtttatgaacccaagaaacccattt 19848639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 26646915 - 26646608
Alignment:
Q  14 agtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtat 113  Q
    ||||| |||||||||||||| || || | ||| ||||| ||||||||||| |||||||||||||| || || |||||| |||| | || |||||| ||||    
T  26646915 agtgaaatgaaaacaggatccccaataataggataaccccccaaaaccatgatatcctccaaagtaatagttgcttcaccaaaggcaatcacaaaggtat 26646816  T
Q  114 ttgtcttagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctg 213  Q
    |||||| | |||||||||||||  | ||| ||||||||||||  |||||| |  ||||||| ||| | |||| ||| || || |||||||| ||||| |     
T  26646815 ttgtctcacaacaccatttctcaactaccccatatagcaagtcatgatttttatgtatgcggcaccttgtgcccattattgcttcaaagatgccaacttt 26646716  T
Q  214 cttccacacagattcatgctttggtttaagctgatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgac 313  Q
    ||||||||| | |||||  ||  ||||||| ||||||||||| | |||||||||| |  ||||| | ||||| |||||||| |  |  ||||||||| ||    
T  26646715 cttccacactgtttcatatttgagtttaagttgatcaacccatctaacccatttggcgcgtgggcgacgccaaccagtgaagttgattttcaaaggccac 26646616  T
Q  314 tcctttgg 321  Q
    ||||||||    
T  26646615 tcctttgg 26646608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 19857969 - 19857734
Alignment:
Q  21 tgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttg-tct 119  Q
    ||||||||||||| || | || || |||||| |||||||||| || |||||| | ||| ||||| |||||| |||| |||||||| |||||||| | |||    
T  19857969 tgaaaacaggatcaccaaagagagagtaaccccccaaaaccacaacatcctctatagtaattgttgcttcaccaaagggaaacacgaatgtattgggtct 19857870  T
Q  120 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 219  Q
     |||||||||||| ||  ||||| |||| | ||||||| ||| | ||| |||||| || || || ||| ||||||||||||| ||| || | | ||||||    
T  19857869 cagaacaccatttgtcaacaaccccataaaccaagtttggatctttcattatgcggcatttagtactcctaatagcatcaaaaatttcagctttcttcca 19857770  T
Q  220 cacagattcatgctttggtttaagctgatcaaccca 255  Q
    |||||||||||  ||||||| ||| || ||||||||    
T  19857769 cacagattcatattttggttgaagttggtcaaccca 19857734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 20005225 - 20005319
Alignment:
Q  41 acagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 135  Q
    ||||| ||||| |||||||| || | ||| |||||||||||||| |||||| ||||| |||||||||| || ||||| | | |||||||||||||    
T  20005225 acaggataaccccccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctc 20005319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 19943585 - 19943503
Alignment:
Q  53 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 135  Q
    |||||||| || | ||| |||||||||||||| |||||| ||||| |||||||||| || ||||| | | |||||||||||||    
T  19943585 cccaaaacaatgacatcttccaaagtgattgttgcttcaccaaatagaaacacaaaggtgtttgtttcacaacaccatttctc 19943503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 24840226 - 24840308
Alignment:
Q  53 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 135  Q
    |||||||| || | |||||||||||||||||| |||||| ||||| ||||||| || || ||||| | | |||||||||||||    
T  24840226 cccaaaacaatgacatcctccaaagtgattgttgcttcaccaaatagaaacacgaaggtgtttgtttcacaacaccatttctc 24840308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 26651899 - 26651697
Alignment:
Q  53 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctccgcaacctcatatagca 152  Q
    |||||||| || | |||||||||||||||||| || ||| |||| ||||| |||||   |||||||| |  |||||||||||| | || | |||| | ||    
T  26651899 cccaaaacaatgacatcctccaaagtgattgttgcctcaccaaaaggaaaaacaaagcaatttgtctcactacaccatttctcagaaatcccataaacca 26651800  T
Q  153 agttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccacacagattcatgctttggtttaagctgatcaac 252  Q
    ||| ||||||| ||| || ||| | ||| || ||||| ||||  |||||||| ||  | |  |||||||| ||||||| ||| || ||||| ||||||||    
T  26651799 agtcttgatttttcattacgcggctcttagtactcattataggttcaaagatgccggcttttttccacactgattcatacttgggcttaagttgatcaac 26651700  T
Q  253 cca 255  Q
    |||    
T  26651699 cca 26651697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 9814936 - 9814602
Alignment:
Q  20 atgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtct 119  Q
    ||||||| |||||| ||||||||||| ||||| ||||||||||||| |||||||||| | || || || ||| |||| ||||||||||||||||| ||||    
T  9814936 atgaaaataggatcaccgatgacaggataaccccccaaaaccataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtct 9814837  T
Q  120 tagaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttcca 219  Q
    || |||||||||||||  ||||| |||||||||||||||||| | ||| |||||| |||||||| ||||| |||||||||||||| || || | ||||||    
T  9814836 tacaacaccatttctcaacaaccccatatagcaagttttgatctttcattatgcggcacttggtactcattatagcatcaaagatacctactttcttcca 9814737  T
Q  220 cacagattcatgctttggtttaagctgatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactccttt 319  Q
    || |||||||| |||||||||||| |||||||||||| ||| |||||| ||||||||||  ||||| ||| ||||||| || ||||||||| |||| |||    
T  9814736 caaagattcatactttggtttaagttgatcaacccaataaatccatttctcttgtgggtaacgccatccattgaaatggaatttcaaaggccactcattt 9814637  T
Q  320 ggatgaaagacacgagacattgatgatggattaaa 354  Q
    |||| ||| |||  ||||| ||||||||| |||||    
T  9814636 ggatcaaacacataagacaatgatgatgggttaaa 9814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 26355148 - 26355393
Alignment:
Q  22 gaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctta 121  Q
    ||||| |||||| || |||||||||||||| || | |||||||| ||||||||||   |  || || ||| |||| ||||||||||||||||| |||| |    
T  26355148 gaaaataggatcaccaatgacagggtaacccccaagaaccataacatcctccaaacctaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 26355247  T
Q  122 gaacaccatttctccgcaacctcatatagcaagttttgatttctcagtatgcgacacttggtgctcataatagcatcaaagattccaacctgcttccaca 221  Q
     |||||||||||||| ||||| | || ||||||||||||||| |||||||||| || ||||| ||||| ||||||||||| || ||| | | |||||| |    
T  26355248 caacaccatttctccacaaccccgtaaagcaagttttgatttttcagtatgcggcatttggtactcattatagcatcaaaaatcccagctttcttccaaa 26355347  T
Q  222 cagattcatgctttggtttaagctgatcaacccaacaaacccattt 267  Q
    | | |||||  ||  | ||||| ||||||||||||||| |||||||    
T  26355348 ccggttcatatttgagcttaagttgatcaacccaacaaccccattt 26355393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 38435383 - 38435465
Alignment:
Q  53 cccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtcttagaacaccatttctc 135  Q
    ||||||||||| ||||| || ||||||||||| ||| || ||| |||||||||||||||||| |||||| |||||||||||||    
T  38435383 cccaaaaccatgatatcttcaaaagtgattgttgctacaccaagtggaaacacaaatgtattggtcttacaacaccatttctc 38435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 2319479 - 2319587
Alignment:
Q  246 gatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatga 345  Q
    ||||||||||| ||| |||||| ||||||||||| ||||| ||| ||||||| || ||||||||| |||| ||||||| ||| |||  ||||| ||||||    
T  2319479 gatcaacccaataaatccatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatgatga 2319578  T
Q  346 tggattaaa 354  Q
    ||| |||||    
T  2319579 tgggttaaa 2319587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 1717111 - 1716875
Alignment:
Q  22 gaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctta 121  Q
    |||||||||||| || |||||||||||| | || ||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |    
T  1717111 gaaaacaggatcaccaatgacagggtaatcccctaaaaccataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgtatttgtctca 1717012  T
Q  122 gaacaccatttctccgcaacctcatatagcaagttttgatttctcagtat---gcgacacttggtgctcataatagcatcaaagattccaacctgcttcc 218  Q
     |||||||||| ||  ||| | |||||| ||||||||||||| ||  |||    ||||||||||||||||| ||||| |||||||| ||||| | |||||    
T  1717011 caacaccatttttcaacaatcccatataacaagttttgatttttctttatacgacgacacttggtgctcattatagcttcaaagatgccaactttcttcc 1716912  T
Q  219 acacagattcatgctttggtttaagctgatcaaccca 255  Q
    |||| | |||||| ||  ||||||| | |||||||||    
T  1716911 acactgtttcatgtttgagtttaagttcatcaaccca 1716875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 48259459 - 48259567
Alignment:
Q  246 gatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatga 345  Q
    ||||||||||| ||| |||||| ||||||||||| ||||| ||| ||||||| || ||||||||| |||| ||||||| ||| |||  ||||| ||||||    
T  48259459 gatcaacccaataaatccatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatgatga 48259558  T
Q  346 tggattaaa 354  Q
    ||| |||||    
T  48259559 tgggttaaa 48259567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 45887492 - 45887600
Alignment:
Q  246 gatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatga 345  Q
    ||||||||||| |||  ||||| ||||||||||| ||||| ||| ||||||| || ||||||||| |||| ||||||| ||| |||  ||||| ||||||    
T  45887492 gatcaacccaataaatacatttctcttgtgggtgacgccatccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatgatga 45887591  T
Q  346 tggattaaa 354  Q
    ||| |||||    
T  45887592 tgggttaaa 45887600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 47331788 - 47331680
Alignment:
Q  246 gatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatga 345  Q
    ||||||||||| ||| |||||| ||||||||||| ||||| ||| ||||||| || ||||||| | |||| ||||||| ||| |||  ||||| ||||||    
T  47331788 gatcaacccaataaatccatttctcttgtgggtgacgccatccattgaaatggaatttcaaagaccactcatttggatcaaacacataagacaatgatga 47331689  T
Q  346 tggattaaa 354  Q
    ||| |||||    
T  47331688 tgggttaaa 47331680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 55864471 - 55864579
Alignment:
Q  246 gatcaacccaacaaacccatttgtcttgtgggtggcgccacccagtgaaatgaaacttcaaaggcgactcctttggatgaaagacacgagacattgatga 345  Q
    ||||||||||| ||| |||||| ||||||||||| ||||| ||| ||||||| || ||||||||| |||| ||||||| ||| |||  ||||| ||||||    
T  55864471 gatcaacccaataaatccatttctcttgtgggtgacgccaaccattgaaatggaatttcaaaggccactcatttggatcaaacacataagacaatgatga 55864570  T
Q  346 tggattaaa 354  Q
    ||| |||||    
T  55864571 tgggttaaa 55864579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 22652301 - 22652448
Alignment:
Q  14 agtgagatgaaaacaggatcgccgatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtat 113  Q
    |||||||||||||||||||| || |  |||||||||||  | |||| ||||| ||| || || ||||| || || ||| ||||||||||||||||||  |    
T  22652301 agtgagatgaaaacaggatcaccaagaacagggtaaccctctaaaatcataacatcttctaaggtgatagttgcctcaccaaatggaaacacaaatgagt 22652400  T
Q  114 ttgtcttagaacaccatttctccgcaacctcatatagcaagttttgat 161  Q
    |||||| | | |||||||||||  ||||| || |||||||||| ||||    
T  22652401 ttgtctcacagcaccatttctcaacaaccccaaatagcaagttatgat 22652448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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