View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_high_18 (Length: 377)
Name: NF11402_high_18
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 15136723 - 15137068
Alignment:
| Q |
18 |
aattatgccatgctgataagaaattaatttcttgatcattaggttctttatatatccacttgtgactatgatctgcagctacttttccaatcaacctgct |
117 |
Q |
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| T |
15136723 |
aattatgccatgctgataagaaattaatttcttgatcattaggttctttatatatccacttgtgactatgatctgcagctacttttccaatcaacctgct |
15136822 |
T |
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| Q |
118 |
ccataaaatctaattaactaataaacctatttgcttaaaacttctttcaacaagaacaaaatgttgctaaaataagtaaattaaattaatatgaatttag |
217 |
Q |
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| T |
15136823 |
ccataaaatctaattaactaataaacctatttgcttaaaacttctttcaacaagaacaaaatgttgctaaaactagtaaaataaattaatatgaatttag |
15136922 |
T |
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| Q |
218 |
tagatgctacatagtacatacccttctccatagttatagatctcatgtgacatcttgaagaaaagttcaggttgaagaccttggtaaggttgaattaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15136923 |
tagatgctacatagtacatacccttctccatagttatagatctcatgtgacatcttgaagaaaagttcaggttgaagaccttggtaaggttgaattaatt |
15137022 |
T |
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| Q |
318 |
cacagttcccataaactgatgatgagctaggacaatcaccagtgtt |
363 |
Q |
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| T |
15137023 |
cacagttcccataaactgatgatgagctaggacaatcaccagtgtt |
15137068 |
T |
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