View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_high_19 (Length: 376)
Name: NF11402_high_19
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_high_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 28157059 - 28156693
Alignment:
| Q |
1 |
tccttccgccacgtcaacactactcttccctctccttgctgcagaggatcccacccttttcctacggttcttgcaaattaaccacatgattataattaag |
100 |
Q |
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| T |
28157059 |
tccttccgccacgtcaacactactcttccctctccttgctgcagaggatcccacccttttcctacggttcttgcaaattaaccacatgattataattaag |
28156960 |
T |
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| Q |
101 |
catattaacaacactaatccaccaacactccctccaattatcttaatcaacttcgtacggttcgtacggtttgattttgacgacgtcgttttcccgttcc |
200 |
Q |
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| T |
28156959 |
catattaacaacactaatccaccaacactccctccaattatcttaatcaacttcgtacggtt---------tgattttgacgacgtcgttttcccgttcc |
28156869 |
T |
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| Q |
201 |
ctccaatgggactcaccgacggtgacggcgccaacggcggtaacactgtgctgcttttacattttcggtggatctgttcaccacataactctaagtttcc |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28156868 |
ctccaatgggactcaccgacggcgacggcgccaacggcggtaacactgtgctgcttttacattttcggtggatctgttctccacataactctaagtttcc |
28156769 |
T |
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| Q |
301 |
tgaaaacgacgacgcattgaaccggttcaacgccgccgtcaccggaatctcgccggagagtttattattcgacaca |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28156768 |
tgaaaacgacgacgcattgaaccggttcaacgccgccgtgaccggaatctcgccggagagtttattattcgacaca |
28156693 |
T |
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