View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_high_21 (Length: 361)
Name: NF11402_high_21
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 22813192 - 22812878
Alignment:
| Q |
1 |
attattttaattaaaaaggagagtaatgtccacgcgtgtaattgcagaatnnnnnnnnnnnn-------tcaaggaaaaattggcaggcacgtgcaatct |
93 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
22813192 |
attattttaattaaaaaggagagtaatatccacgcgtgtaattgcagaataaaaaaaaaaagaaaaaaatcaagaaaaaattgacaggcacgtgcaatct |
22813093 |
T |
|
| Q |
94 |
tcatgaaagctaacattgaactttcatcttcaatccataccaaacctctatcttttccatgcaatcgtctattaatttaccagaaaccctatcatcttca |
193 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
22813092 |
tcatgaaaggtaacattgaactttcatcttcaatccataccaaacatttatcttcgccattcaattgtctattaatttaccagaaaccctatcatcttca |
22812993 |
T |
|
| Q |
194 |
atccataccaaacttaaaccaatacctcctcctcctcccaataaacatccaattagatcagagatttgttctccttctcaatcattttaaagaaagttaa |
293 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
22812992 |
atccataccaaacttaaaccaatacctcctccccctcccaataaacatccaattagatcagagatttattctccttctcaatcattttaaataaagttaa |
22812893 |
T |
|
| Q |
294 |
tcagtactcactttt |
308 |
Q |
| |
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| |||||||| |||| |
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| T |
22812892 |
ttagtactcaatttt |
22812878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 63 - 301
Target Start/End: Complemental strand, 2214877 - 2214642
Alignment:
| Q |
63 |
tcaaggaaaaattggcaggcacgtgcaatcttcatgaaagctaacattgaactttcatcttcaatccataccaaacctctatcttttccatgcaatcgtc |
162 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||| |||||||| |
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| T |
2214877 |
tcaagaaaaaattggcaggcacgtgcaatcttcatgaaagataacattgaactttcatcttgaatccataccaaacctttatcttcgccattcaatcgtc |
2214778 |
T |
|
| Q |
163 |
tattaatttaccagaaaccctatcatcttcaatccataccaaacttaaaccaatacctcctcctcctcccaataaacatccaattagatcagagatttgt |
262 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2214777 |
tattaatttaccagaaacactatcatcttcaatccataccaaacttaaaccaatacctcctc---ctcccaataaacatccaattagatcagagatttgt |
2214681 |
T |
|
| Q |
263 |
tctccttctcaatcattttaaagaaagttaatcagtact |
301 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||| |
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| T |
2214680 |
tctccttctcaatcattttaaataaagttaattagtact |
2214642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 39688495 - 39688798
Alignment:
| Q |
1 |
attattttaattaaaaaggagagtaatgtccacgcgtgtaattgcagaatnnnnnnnnnnnntcaaggaaaaattggcaggcacgtgcaatcttcatgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |
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| T |
39688495 |
attattttaattaaaaaggagagtaatatccacgcgtgtaattgcagaagaaaaaaaa------aaaaaaaaattgacaggcacgtgcaatcttcatgaa |
39688588 |
T |
|
| Q |
101 |
agctaacattgaactttc--atcttcaatccataccaaacctctatcttttccatgcaatcgtctattaatttaccagaaaccctatcatcttcaatcca |
198 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||| | |||||| |||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39688589 |
aggtaacattgaactttctcatcttcaatccataccaaacatttatcttcgccattcaattgtctattaatttaccagaaaccctatcatcttcaatccg |
39688688 |
T |
|
| Q |
199 |
taccaaacttaaaccaatacctcctcctcctcccaataaacatccaattagatcagagatttgttctccttctcaatcattttaaagaaagttaatcagt |
298 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |
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| T |
39688689 |
taccaaacttaaaccaatacctcctcctcatcccaataaacatccaattagatcagagatttattctccttctcaatcattttaaataaagttaattagt |
39688788 |
T |
|
| Q |
299 |
actcactttt |
308 |
Q |
| |
|
||||| |||| |
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|
| T |
39688789 |
actcaatttt |
39688798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 344
Target Start/End: Original strand, 39688789 - 39688821
Alignment:
| Q |
312 |
actcaattttgaaacgcggttttggtcagatct |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
39688789 |
actcaattttgaaacgcggttttggtcagatct |
39688821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 231 - 344
Target Start/End: Complemental strand, 21843975 - 21843862
Alignment:
| Q |
231 |
ccaataaacatccaattagatcagagatttgttctccttctcaatcattttaaagaaagttaatcagtactcactttttacactcaattttgaaacgcgg |
330 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
21843975 |
ccaataaacacccaattagatcagagatttgttctccttctcaatcattttacataaagttaattagtactcaaattttacactcaattttgaaacgcgg |
21843876 |
T |
|
| Q |
331 |
ttttggtcagatct |
344 |
Q |
| |
|
|||||||||||||| |
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|
| T |
21843875 |
ttttggtcagatct |
21843862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 21844194 - 21844043
Alignment:
| Q |
63 |
tcaaggaaaaattggcaggcacgtgcaatcttcatgaaagctaacattgaactttcatcttcaatccataccaaacctctatcttttccatgcaatcgtc |
162 |
Q |
| |
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||||||| |||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||| | ||| ||||| || |
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| T |
21844194 |
tcaaggacaaattggcaggcacatg-aatcttcatgaaaggtaacattgaactttcaccttcaatccataccaaacatttatcttcttcattcaatcttc |
21844096 |
T |
|
| Q |
163 |
tattaatttaccagaaaccctatcatcttcaatccataccaaacttaaaccaa |
215 |
Q |
| |
|
|||||||| ||| ||||||||| ||||| |||||||||||||| ||||||| |
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|
| T |
21844095 |
cattaattttccaaaaaccctattatcttaaatccataccaaacaaaaaccaa |
21844043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 21844260 - 21844215
Alignment:
| Q |
5 |
ttttaattaaaaaggagagtaatgtccacgcgtgtaattgcagaat |
50 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||||||||||| ||| |
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|
| T |
21844260 |
ttttaattgaaaaggagagtaatatccatgcgtgtaattgcaaaat |
21844215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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