View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11402_high_25 (Length: 305)
Name: NF11402_high_25
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 39529937 - 39530214
Alignment:
| Q |
12 |
atgaaagggggaataacctgataggtagtgtcgaatttatcatacataaagcgagtgatgatgctagttttaccaacggattgatcacctaagaaaacga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39529937 |
atgaaagggggaataacctgataggtagtgtcgaatttatcatacataaagcgagtgatgatgctagttttaccaacggattgatcacctaagaaaacga |
39530036 |
T |
|
| Q |
112 |
gtttgtatttggcgagaggtgatacagtcaccatttttgtttcttccttctttgggaacttgagtaacgcgaatttggctcagatctgaatctgaatctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39530037 |
gtttgtatttggcgagaggtgatacagtcaccatttttgtttcttccttctttgggaacttgagtaacgcgaatttggctcagatctgaatctgaatctc |
39530136 |
T |
|
| Q |
212 |
tcaaaattctcgagaaacagaaaacgaagaaagggagaaaattcagttgaagataactgaaaaaccgttccctttttg |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39530137 |
tcaaaattctcgagaaacagaaaacgaagaaagggagaaaattcagttgaagataactgaaaaaccgttccctttttg |
39530214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 37854156 - 37854277
Alignment:
| Q |
26 |
aacctgataggtagtgtcgaatttatcatacataaagcgagtgatgatgctagttttaccaacggattgatcacctaagaaaacgagtttgtatttggcg |
125 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
37854156 |
aacctgataggtggtgtcaaatttgtcgtacatgaagcgggtgatgatactggttttgccaacggattgatcgcctaagaaaacgagcttgtatttggcg |
37854255 |
T |
|
| Q |
126 |
agaggtgatacagtcaccattt |
147 |
Q |
| |
|
|||||||| || ||| |||||| |
|
|
| T |
37854256 |
agaggtgaaaccgtcgccattt |
37854277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 40880766 - 40880853
Alignment:
| Q |
42 |
tcgaatttatcatacataaagcgagtgatgatgctagttttaccaacggattgatcacctaagaaaacgagtttgtatttggcgagag |
129 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||||| ||||||||||| || | |||||| | |||||| || ||||||| |
|
|
| T |
40880766 |
tcgaatttgtcgtacataaagcgagtgatgatgctggttttaccgacggattgatcgccgaggaaaaccaatttgtacttcgcgagag |
40880853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 4581321 - 4581230
Alignment:
| Q |
27 |
acctgataggtagtgtcgaatttatcatacataaagcgagtgatgatgctagttttaccaacggattgatcacctaagaaaacgagtttgta |
118 |
Q |
| |
|
||||||||||| | || |||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||| || || || |||||||| |
|
|
| T |
4581321 |
acctgataggtgttatcaaatttatcgtacatgaagcgagtgatgatgctggttttaccaacagattggtcacccaaaaataccagtttgta |
4581230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University